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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttgtttggtgttttttttataattcataccagattatgaaatataacattttatatatacatctttattatatagGAATGATGCTGGTGGTGAGGTGGCAAATCAACAAGTGCATTTGCCTTTGATTTTGCCTAAAGTTCCTGGCCGGTTCTACTTTTATTTTGGAAAACCATTG

Basic information

species Glycine max
transcript GLYMA16G05580.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51345114|gb|CO985847.1|CO985847
EST:     TACTTTAGGTCTGAAATAGAAAGCCTCACAAAGGAGACTGCGCACTTGAG                         GAATGATGCTGGTGGTGAGGTGGCAAATCAACAAGTGCATTTGCCTTTGAT
genomic: TACTTTAGGTCTGAAATAGAAAGCCTCACAAAGGAGACTGCGCACTTGAGgtatcttgtt ... tattatatagGAATGATGCTGGTGGTGAGGTGGCAAATCAACAAGTGCATTTGCCTTTGAT
EST: gi|254346772|gb|GR856494.1|GR856494
EST:     TACTTTAG-TCTGAAATAGAAAGCCTCACAAAGGAGACTGCGCACTTGAG                         GAATGATGCTGGTGG
genomic: -ACTTTAGGTCTGAAATAGAAAGCCTCACAAAGGAGACTGCGCACTTGAGgtatcttgtt ... tattatatagGAATGATGCTGGTGG
EST: gi|254346773|gb|GR856495.1|GR856495
EST:     TACTTTAGGTCTGAAATAGAAAGCCTCACAAAGGAGACTGCGCACTTGAG                         GAATGATGCTGGTGGTGAGGTGGCAAATCAACAAGTGCATTTGCCTTTGAT
genomic: TACTTTAGGTCTGAAATAGAAAGCCTCACAAAGGAGACTGCGCACTTGAGgtatcttgtt ... tattatatagGAATGATGCTGGTGGTGAGGTGGCAAATCAACAAGTGCATTTGCCTTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattcataccagattatgaaatataacattttatatatacatctttattatatagGAATGATGCTGGTGGTGAGGTGGCAAATCAACAAGTGCATTTGCCTTTGATTTTGCCTAAAGTTCCTGGCCGGTTCTACTTTTATTTTGGAAAACCATTG
                    atataac  putative branch site (score: 3)
                                         tctttatt  putative PPT
            attatgaaatataaca  TA-rich tract