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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcttttcactctcctgacaattcaacaatgcaagtcttctagtataatgactttcaatacacttgtgtgcacagTGTGGTCTCAATTCATGTTCATGGGAAGGATAAGAAGTCTGGTTCTTCTCTTCAAGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGGTAGAT

Basic information

species Glycine max
transcript GLYMA13G33390.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G33390.1 (Glycine max), 3'ss of exon 12
lower sequence: AT1G73860.1 (Arabidopsis thaliana), 3'ss of exon 15
gtttgtctt----ttcactctcctga--caattcaacaatgca--------agtcttctag-----tataatgactttcaatacacttgtgtgcacagTGTGGTCTCAATTCATGTTCATGGGAAGGATAAGAAGTCTGGTTCTTCTCTTCAAGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGGTAGAT
|||   |||    ||||  |||  ||  |||  |||  |||          || | || ||     || | ||| | |  |||   ||   |   |||  | ||| |  |||| ||||  || || |||   ||| | |||||    ||  | ||||||||||||||||| ||| ||||||||||||| || ||||||
gttctccttcatattcatcctctagaaccaaaacaaatatgtgttttcaacagccctccaggtttttacactgaatct--atatgttttcttatgcagCATTGTCACTGTTCACGTTCGCGGTAAAGATTTAAAGACCGGTTCCGTGCTATACGGTAATCTTCATTTGGTGGATCTGGCAGGAAGTGAGAGAGTAGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcaacaatgcaagtcttctagtataatgactttcaatacacttgtgtgcacagTGTGGTCTCAATTCATGTTCATGGGAAGGATAAGAAGTCTGGTTCTTCTCTTCAAGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGGTAGAT
                    tagtataat  TA-rich tract