1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gtaactggtcatggattcatcagaaattcataaatttctatcttgacatctatggtctcactgttcttttaactttgaaaattctgtttctgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTTTGGAGACAGCTGCAATCAGTGTTGCTCCTGCAAATGGAGGCCCGGAAC
species | Glycine max |
transcript | GLYMA08G11980.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGCGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|208341381|gb|GE139035.1|GE139035
genomic: GGCGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: CGGGCTGANGACATAATGAATATTGTTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|207778584|gb|GD750603.1|GD750603
genomic: CGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: CGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|193695946|gb|FK640564.1|FK640564
genomic: CGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: GGCGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|208073722|gb|GD872819.1|GD872819
genomic: GGCGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: GGCGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|208303163|gb|GE101432.1|GE101432
genomic: GGCGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: GGGCGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|193337426|gb|FK303800.1|FK303800
genomic: GGGCGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: TTGTTGTACAAGGGCGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|193680472|gb|FK624378.1|FK624378
genomic: TTGTTGTACAAGGGCGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: GGCGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|193394127|gb|FK357712.1|FK357712
genomic: GGCGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: GGCGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|207711864|gb|GD693678.1|GD693678
genomic: GGCGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: GGCGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|208192749|gb|GD989786.1|GD989786
genomic: GGCGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: GGCGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|6848074|gb|AW350364.1|AW350364
genomic: GGCGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: TTGTTGTACAAGGGCGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|193657917|gb|FK601944.1|FK601944
genomic: TTGTTGTACAAGGGCGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: GGCGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|58018254|gb|CX704996.1|CX704996
genomic: GGCGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: TTGTTGTACAAGGGCGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|208104513|gb|GD904518.1|GD904518
genomic: TTGTTGTACAAGGGCGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: GGGCGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTATCTGTGATAGGGCCGACGAAGGCATTEST: gi|193393426|gb|FK358830.1|FK358830
genomic: GGGCGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: CGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|207811266|gb|GD783397.1|GD783397
genomic: CGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: GAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|193402267|gb|FK368480.1|FK368480
genomic: GAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: GGGCGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|15815389|gb|BI787664.1|BI787664
genomic: GGGCGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: TTGTTGTACAAGGGCGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|193461963|gb|FK429416.1|FK429416
genomic: TTGTTGTACAAGGGCGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: GGCGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTEST: gi|193419911|gb|FK381979.1|FK381979
genomic: GGCGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATT
EST: TTGTTGTACAAGGGCGGGCTGATGACACAATGAATATTGGTGGAATAAAG ACAAGTTCTGTAGAAATTAGAGCGTGTCTGTGATAGGGCCGACGAAGGCAT
genomic: TTGTTGTACAAGGGCGGGCTGATGACACAATGAATATTGGTGGAATAAAGgtatcgcatc ... tgatatgcagACAAGTTCTGTAGAAATT-GAGCGTGTCTGTGATAGGGCCGACGAAGGCAT
acatctatggtctcactgttcttttaactttgaaaattctgtttctgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTTTGGAGACAGCTGCAATCAGTGTTGCTCCTGCAAATGGAGGCCCGGAAC
ttctgtttct CT-rich tract
ttttaactttgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactggtcatggattcatcagaaattcataaatttctatcttgacatctatggtctcactgttcttttaactttgaaaattctgtttctgatatgcagACAAGTTCTGTAGAAATTGAGCGTGTCTGTGATAGGGCCGACGAAGGCATTTTGGAGACAGCTGCAATCAGTGTTGCTCCTGCAAATGGAGGCCCGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
gtaactg
- - - - -catggat
- - - - - - - - - - - - - - - - - - - - -cttgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtttc