1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgtgtttcattctacgtcagtttcttctgccttttgagagagtatagtattgtattgtatttatttacatgctgactttttcctccttttagTACGAGGATGATGAAGGTGACAAAATTGTTCTTGCAACCAATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAG
species | Glycine max |
transcript | GLYMA08G00560.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CAATCATGCAGAGACTTGATGTTAATGATGGAGAACGCCCTATAATTTTG TACGAGGATGATGAAGGTGACAAAATTGTTCTTGCAACCAATAGTGATCTTEST: gi|31312544|gb|CD397747.1|CD397747
genomic: CAATCATGCAGAGACTTGATGTTAATGATGGAGAACGCCCTATAATTTTGgtgtgtttca ... ctccttttagTACGAGGATGATGAAGGTGACAAAATTGTTCTTGCAACCAATAGTGATCTT
EST: CAATCATGCAGAGACTTGATGTTAATGATGGAGAACGCCCTATAATTTTG TACGAGGATGATGAAGGTGACAAAATTGTTCTTGCAACCTATAGTGATCTTEST: gi|207733915|gb|GD710647.1|GD710647
genomic: CAATCATGCAGAGACTTGATGTTAATGATGGAGAACGCCCTATAATTTTGgtgtgtttca ... ctccttttagTACGAGGATGATGAAGGTGACAAAATTGTTCTTGCAACCAATAGTGATCTT
EST: AGAGACTTGATGTTAATGATGGAGAACGCCCTATAATTTTG TACGAGGAATGATGAAGGTGACAAAATTGTTCTTGCAACCAATAGTGATCTEST: gi|254333300|gb|GR850550.1|GR850550
genomic: AGAGACTTGATGTTAATGATGGAGAACGCCCTATAATTTTGgtgtgtttca ... ctccttttagTACGAGG-ATGATGAAGGTGACAAAATTGTTCTTGCAACCAATAGTGATCT
EST: CAATCATGCAGAGACTTGATGTTAATGATGGAGAACGCCCTATAATTTTG TACGAGGATGATGAAGGTGACAAAATTGTTCTTGCAACCAATAGTGATCTT
genomic: CAATCATGCAGAGACTTGATGTTAATGATGGAGAACGCCCTATAATTTTGgtgtgtttca ... ctccttttagTACGAGGATGATGAAGGTGACAAAATTGTTCTTGCAACCAATAGTGATCTT
gagagtatagtattgtattgtatttatttacatgctgactttttcctccttttagTACGAGGATGATGAAGGTGACAAAATTGTTCTTGCAACCAATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAG
tgctgac putative branch site (score: 2)
tgctgactttttcctc CT-rich tract
tatagtattgtattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtttcattctacgtcagtttcttctgccttttgagagagtatagtattgtattgtatttatttacatgctgactttttcctccttttagTACGAGGATGATGAAGGTGACAAAATTGTTCTTGCAACCAATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG