1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctaaacatttgcatgttctaaataatgccaccattgtcaacttgttccttaaaaattgtgatcacaaaatagctgaagggtttttcttgtgatcacacagCGAGGTCAACCTGACAAAACCCAACAGAGTGGCAGAAGGAACCGAGGGTCAATGCACATTTCAGAGGAAGACATCATGTACATTAGCACTGATGATTAAA
species | Glycine max |
transcript | GLYMA06G41190.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTGATGAATGGGAGGCAGCATATTTATACATGTCATTTGTATTGAGAAAG CGAGGTCAACCTGACAAAACCCAACAGAGTGGCAGAAGGAACCGAGGGTCAEST: gi|22525515|gb|BU084326.1|BU084326
genomic: CTGATGAATGGGAGGCAGCATATTTATACATGTCATTTGTATTGAGAAAGgtcagtatca ... gatcacacagCGAGGTCAACCTGACAAAACCCAACAGAGTGGCAGAAGGAACCGAGGGTCA
EST: CTGATGAATGGGAGGCAGCATATTTATACATGTCATTTGTATTGAGAAAG CGAGGTCAACCTGACAAAACCCAACAGAGTGGCAGAAGGAACCGAGGGTCAEST: gi|21602373|gb|BQ612704.1|BQ612704
genomic: CTGATGAATGGGAGGCAGCATATTTATACATGTCATTTGTATTGAGAAAGgtcagtatca ... gatcacacagCGAGGTCAACCTGACAAAACCCAACAGAGTGGCAGAAGGAACCGAGGGTCA
EST: CTGATGAATGGGAGGCAGCATATTTATACATGTCATTTGTATTGAGAAAG CGAGGTCAACCTGACAAAACC-AACAGAGTGGC
genomic: CTGATGAATGGGAGGCAGCATATTTATACATGTCATTTGTATTGAGAAAGgtcagtatca ... gatcacacagCGAGGTCAACCTGACAAAACCCAACAGAGTGGC
tccttaaaaattgtgatcacaaaatagctgaagggtttttcttgtgatcacacagCGAGGTCAACCTGACAAAACCCAACAGAGTGGCAGAAGGAACCGAGGGTCAATGCACATTTCAGAGGAAGACATCATGTACATTAGCACTGATGATTAAA
aaaaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaaacatttgcatgttctaaataatgccaccattgtcaacttgttccttaaaaattgtgatcacaaaatagctgaagggtttttcttgtgatcacacagCGAGGTCAACCTGACAAAACCCAACAGAGTGGCAGAAGGAACCGAGGGTCAATGCACATTTCAGAGGAAGACATCATGTACATTAGCACTGATGATTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
ctaaaca
- - - - - gcatgtt
- - - - - - - - - - - - -tgccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgaag