Sequence
atgc intronic sequence ATGC exonic sequencegtagacatcaattcacttcattttattaaaatactttaatgttatgacttatgaaatactgattggcaaacacagtttctatgacttgtaataaaatcacacatattgaattttatggtgactgggaatttctgaattggtgtcatgaatttcagGTCATAGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTTGAGCTTAATGTGTTCAAGCCAATGATTGCCAGTTGTCTCCTGCAT
Basic information
species | Glycine max |
transcript | GLYMA02G01920.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G01920.1 (Glycine max), 3'ss of exon 12
lower sequence: AT2G47510.1 (Arabidopsis thaliana), 3'ss of exon 13
gtagacatcaattcacttcattttattaaaatactttaatgttatgacttatgaaatactgattggcaaacacagtttctatgacttgtaataaaatcacacatattga--attttatggtgactgggaatttctgaattggtgtcatgaa--tttcagGTCATAGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTTGAGCTTAATGTGTTCAAGCCAATGATTGCCAGTTGTCTCCTGCAT
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----------------------------------------------------gtaagtcccatctatcaatacattcttagtacagaccaatgaatctagatgctaaggttgtattattgttccttg-actgtttgggttgcaaccaataacattgcagGTTATGGGAAACCATGTAGCTGTGACAGTTGGTGGGTCAAATGGTCATTTCGAATTGAATGTATTCAAGCCGGTGATCGCGAGTGCTCTTTTACAT
upper sequence: GLYMA02G01920.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 3'ss of exon 13
gtagacatcaattcacttcattttattaaaatactttaatgttatgacttatgaaatactgattggcaaacacagtttctatg-acttgtaataaaatcacacatattgaattttatggtgactgggaatttctgaattggtgtcatgaatttcagGTCATAGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTTGAGCTTAATGTGTTCAAGCCAATGATTGCCAGTTGTCTCCTGCAT
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------------------------------------------------ttattagaacctttttttgtggttgactttatatttatttgttcaaaaa--------attagcttctaatctggttcgaccaatcaaaatttttgtataatcttgcagGTTATGGGAAATCACGTGGCCATTACTGTAGGTGGATCAAACGGTCATTTTGAGCTGAATGTATTCAAGCCTCTGATTGCTAGTGGTCTCCTACGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192310922|gb|FG998898.1|FG998898EST: GGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAG GTCATAGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTT
genomic: GGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAGgtagacatca ... tgaatttcagGTCATAGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acatattgaattttatggtgactgggaatttctgaattggtgtcatgaatttcagGTCATAGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTTGAGCTTAATGTGTTCAAGCCAATGATTGCCAGTTGTCTCCTGCAT
ttgaattttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagacatcaattcacttcattttattaaaatactttaatgttatgacttatgaaatactgattggcaaacacagtttctatgacttgtaataaaatcacacatattgaattttatggtgactgggaatttctgaattggtgtcatgaatttcagGTCATAGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTTGAGCTTAATGTGTTCAAGCCAATGATTGCCAGTTGTCTCCTGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT