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...ttgaataggctcaaatgtaaaaatataataataataataataatagtagtagtattgttgacactgatcttggtgacttgaaaaatattgttccctgcagATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGGCAACAATCAACTGGTGTTACATGGTCAAATCTACCTTCCCCATCAGGAG
species | Glycine max |
transcript | GLYMA01G37580.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACAAATCGTGGAGAG ATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGGEST: gi|120532888|gb|EH261021.1|EH261021
genomic: ATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACAAATCGTGGAGAGgtatgccatt ... ttccctgcagATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGG
EST: ATCGGAAGGGAAGCCATGGTGATG-TATCTTCTTGACAAATCGTGGAGAG ATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGGEST: gi|7588619|gb|AW704411.1|AW704411
genomic: ATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACAAATCGTGGAGAGgtatgccatt ... ttccctgcagATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGG
EST: ATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACAAATCGTGGAGAG ATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGGEST: gi|6069810|gb|AW099416.1|AW099416
genomic: ATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACAAATCGTGGAGAGgtatgccatt ... ttccctgcagATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGG
EST: ATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACATATCGTGGAGAG ATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGG
genomic: ATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACAAATCGTGGAGAGgtatgccatt ... ttccctgcagATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGG
gtagtagtattgttgacactgatcttggtgacttgaaaaatattgttccctgcagATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGGCAACAATCAACTGGTGTTACATGGTCAAATCTACCTTCCCCATCAGGAG
cactgat putative branch site (score: 3)
ttgttccct putative PPT
ttgaaaaatattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgaataggctcaaatgtaaaaatataataataataataataatagtagtagtattgttgacactgatcttggtgacttgaaaaatattgttccctgcagATTACATCATACTCCCCTGGCTTGCATGGTCATGATGCTATTTGGCAGTGGCAACAATCAACTGGTGTTACATGGTCAAATCTACCTTCCCCATCAGGAG
- - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgac