1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...agtgtttttttgagtttgcactattgctgaaattaatgctcttttggatttgaaattgtggcagccgattgtaacatcttttacttggtttattatgcagGAATTTGGGCAGGAATGCATACTGTTAGATATTTTGATGGGAAAACATACAAATGGGTTGGTCTAAGCCAGCAGCCTAATATAATAGGAAAAGTATGTTT
species | Glycine max |
transcript | GLYMA20G25830.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATTATTCTTGACATTTTGATCTGCAATTGGTTTG GAATTTGGGCAGGAATGCATACTGTTAGATATTTTGATGGGAAAACATACAEST: gi|12774461|gb|BG239388.1|BG239388
genomic: ATTATTCTTGACATTTTGATCTGCAATTGGTTTGgtaagagttt ... tattatgcagGAATTTGGGCAGGAATGCATACTGTTAGATATTTTGATGGGAAAACATACA
EST: TATTCTTGACATTTTGATCTGCAATTGGTTGG GAATTTGGGCAGGAATGCATACTGTTAGATATTTTGATGGGAAAACATACA
genomic: TATTCTTGACATTTTGATCTGCAATTGGTTTGgtaagagttt ... tattatgcagGAATTTGGGCAGGAATGCATACTGTTAGATATTTTGATGGGAAAACATACA
ggatttgaaattgtggcagccgattgtaacatcttttacttggtttattatgcagGAATTTGGGCAGGAATGCATACTGTTAGATATTTTGATGGGAAAACATACAAATGGGTTGGTCTAAGCCAGCAGCCTAATATAATAGGAAAAGTATGTTT
ttgtaac putative branch site (score: 2)
tttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgtttttttgagtttgcactattgctgaaattaatgctcttttggatttgaaattgtggcagccgattgtaacatcttttacttggtttattatgcagGAATTTGGGCAGGAATGCATACTGTTAGATATTTTGATGGGAAAACATACAAATGGGTTGGTCTAAGCCAGCAGCCTAATATAATAGGAAAAGTATGTTT
- - - - - - - - tgcacta
- - - - - - - - - - - - tgctgaa
- - - - - - - - - - - - - - - - - aatgctc
- - - - - - - - - - - - - - - - - - - - - - -ggatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagccg