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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taagttatagtagtgggtgaagctgttggaggaaaccctgtagccaatttgattctttcctttgtgtttaactttctccttttgattgtgcatgttccagGCAAAGGGGTACTTGAGAATTGCAGAAAAAGCAGCATTCTTTATTTGGAAACAGCTTTACAATGTGGAAACTCACAGGCTACACCATAGTTTCAGACATT

Basic information

species Glycine max
transcript GLYMA19G39560.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26048920|gb|CA785373.1|CA785373
EST:     AGGGTGAAGTTGAAGGGACCAAATTCTACTTTCCTGTCGTTGGCACTGAA                         GCAAAGGGGTACTTGAGAATTGCAGAAAAAGCAGCATTCTTTATTTGGAAA
genomic: AGGGTGAAGTTGAAGGGACCAAATTCTACTTTCCTGTCGTTGGCACTGAAgtaagttttt ... catgttccagGCAAAGGGGTACTTGAGAATTGCAGAAAAAGCAGCATTCTTTATTTGGAAA
EST: gi|15815146|gb|BI787421.1|BI787421
EST:     AGGGTGAAGTTGAAGGGACCAAATTCTACTTTCCTGTCGTTGGCACTGAA                         GCAAAGGGGTACTTGAGAATTGCAGAAAAAGCAGCATTCTTTATTTGGGAA
genomic: AGGGTGAAGTTGAAGGGACCAAATTCTACTTTCCTGTCGTTGGCACTGAAgtaagttttt ... catgttccagGCAAAGGGGTACTTGAGAATTGCAGAAAAAGCAGCATTCTTTATTTGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttgattctttcctttgtgtttaactttctccttttgattgtgcatgttccagGCAAAGGGGTACTTGAGAATTGCAGAAAAAGCAGCATTCTTTATTTGGAAACAGCTTTACAATGTGGAAACTCACAGGCTACACCATAGTTTCAGACATT
                     tttaacttt  TA-rich tract