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gtattgacttacagacaacagtactcttaaattgtatgcatagtcaatcgtttggttccctctagaaggattgttttataaggcatgatttgtcatgtgagctttttcaaccttgaaaatagcagaatgaagaatacttgtaaaatttagtttccttgttcagcacttaaaattgatatattctttattcatggaatcagCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCTTGGGGCAAGGCTTACTGGAGCTGGATGGGGTGGTTGTGCTGTTGCTTTG
species | Glycine max |
transcript | GLYMA17G03990.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAG CTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCTEST: gi|7926145|gb|AW832171.1|AW832171
genomic: ACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGgtattgactt ... atggaatcagCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCT
EST: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAG CTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCTEST: gi|14205721|gb|BG839399.1|BG839399
genomic: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGgtattgactt ... atggaatcagCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCT
EST: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAG CTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCTEST: gi|41145398|gb|CK605609.1|CK605609
genomic: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGgtattgactt ... atggaatcagCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCT
EST: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAG CTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCTEST: gi|14205748|gb|BG839426.1|BG839426
genomic: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGgtattgactt ... atggaatcagCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCT
EST: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAG CTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCTEST: gi|58019629|gb|CX706371.1|CX706371
genomic: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGgtattgactt ... atggaatcagCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCT
EST: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAG CTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCTEST: gi|21601505|gb|BQ611836.1|BQ611836
genomic: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGgtattgactt ... atggaatcagCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCT
EST: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAG CTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCTEST: gi|26048836|gb|CA785289.1|CA785289
genomic: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGgtattgactt ... atggaatcagCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCT
EST: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAG CTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCTEST: gi|209712398|gb|BW671250.1|BW671250
genomic: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGgtattgactt ... atggaatcagCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCT
EST: CTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAG CTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCTEST: gi|207698661|gb|GD679290.1|GD679290
genomic: CTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGgtattgactt ... atggaatcagCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCT
EST: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAG CTGTCCGGAGTTGGAAGEST: gi|58019308|gb|CX706050.1|CX706050
genomic: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGgtattgactt ... atggaatcagCTGTCCGGAGTTGGAAG
EST: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAG CTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCTEST: gi|209699971|gb|BW661200.1|BW661200
genomic: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGgtattgactt ... atggaatcagCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCT
EST: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAG CTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCT
genomic: GACCTTATGAACGAGAGTCATCATAGCTGCAGCGTTTTATATGAATGCAGgtattgactt ... atggaatcagCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCT
tttagtttccttgttcagcacttaaaattgatatattctttattcatggaatcagCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCTTGGGGCAAGGCTTACTGGAGCTGGATGGGGTGGTTGTGCTGTTGCTTTG
aattgat putative branch site (score: 4)
acttaaaattgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgacttacagacaacagtactcttaaattgtatgcatagtcaatcgtttggttccctctagaaggattgttttataaggcatgatttgtcatgtgagctttttcaaccttgaaaatagcagaatgaagaatacttgtaaaatttagtttccttgttcagcacttaaaattgatatattctttattcatggaatcagCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGTCGTAACAATGGTGCTCTTGGGGCAAGGCTTACTGGAGCTGGATGGGGTGGTTGTGCTGTTGCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT