1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ttttcaactgtgcaacatcaatatttaatgctttttagttcaactattattgctcttgtaacttgtgaatcataactctcacctttttattgttgagcagGATCTTGGTTGGTCTTCCATCTGTTGAGAACAGGGAAATGATCTTGAAGACTCTTTTGGCTAAAGAAAAACATGAAAATTTAGACTTCAAAGAGCTGGCA
species | Glycine max |
transcript | GLYMA16G29040.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AACAGGCCATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGAGAAG GATCTTGGTTGGTCTTCCATCTGTTGAGAACEST: gi|16284507|gb|BI946127.1|BI946127
genomic: AACAGGCCATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGAGAAGgtaggaccac ... tgttgagcagGATCTTGGTTGGTCTTCCATCTGTTGAGAAC
EST: AACAGGCCATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGAGAAA GATCTTGGTTGGTCTTTCATCTGTTGAGAACAGGCAAATGATCCTTGA-GAEST: gi|208160960|gb|GD965556.1|GD965556
genomic: AACAGGCCATTTGACCTTGATGAAGCTATCATAAGACGGTTTGAGAGAAGgtaggaccac ... tgttgagcagGATCTTGGTTGGTCTTCCATCTGTTGAGAACAGGGAAATGATC-TTGAAGA
EST: CCTTGATGGAGCTATCATAAGACGGTTTGAGAGAAG GATCTTGGTTGGTCTTCCATCTGTTGAGAACAGGGAAATGATCTTGAAGAC
genomic: CCTTGATGAAGCTATCATAAGACGGTTTGAGAGAAGgtaggaccac ... tgttgagcagGATCTTGGTTGGTCTTCCATCTGTTGAGAACAGGGAAATGATCTTGAAGAC
attattgctcttgtaacttgtgaatcataactctcacctttttattgttgagcagGATCTTGGTTGGTCTTCCATCTGTTGAGAACAGGGAAATGATCTTGAAGACTCTTTTGGCTAAAGAAAAACATGAAAATTTAGACTTCAAAGAGCTGGCA
ctctcacctttttatt CT-rich tract
tttttattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttcaactgtgcaacatcaatatttaatgctttttagttcaactattattgctcttgtaacttgtgaatcataactctcacctttttattgttgagcagGATCTTGGTTGGTCTTCCATCTGTTGAGAACAGGGAAATGATCTTGAAGACTCTTTTGGCTAAAGAAAAACATGAAAATTTAGACTTCAAAGAGCTGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - actgtgc
- - - - - - - - - - - - ttaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acttgtg