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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggctgaacaatcatagatttccttgatataatttcttataattcttattctgtttggtgatctgtctgaaaatattccagGAACGAGTGCTGAAAGTTTTACAAGTTTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTGAATGGATTAAGAGCCACTTTCCTTCGACCTGGGAACT

Basic information

species Glycine max
transcript GLYMA16G15820.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G15820.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G174785_T02 (Zea mays), 3'ss of exon 15
gtaggctgaacaatcatagatttcct-tgatataatttcttataattcttattctgtttggtgatctgtctgaaaatattcc--------agGAACGAGTGCTGAAAGTTTTACAAGTTTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTGAATGGATTAAGAGCCACTTTCCTTCGACCTGGGAACT
||    |          |  |||    |  |  |  || || | || |||  | |  ||     ||||  || |  |||| |        ||||  | ||  |||||||| ||||||||||||| |||||||| || ||||| ||||| | | | |||||  | || || ||||| ||| || | || ||||
gtgacttatgttgcatcattttttaaatactggagcttatttttatccttgatgttcttacatgtctgcatggatttatttctgttcttcagGAGAGGGTTATGAAAGTTCTACAAGTTTGGGCAGACTGGTTCCTGTTTTCTGATGCATTTCTTAATGGGCTGAGGGCTACTTTTCTTAGATCAGGCAACT

upper sequence: GLYMA16G15820.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv04s0008g06810.t01 (Vitis vinifera), 3'ss of exon 14
------------------gtaggctgaacaatcatagatttccttgatataatttcttataattcttattctgtttggtgatctgtctgaaaatattccagGAACGAGTGCTGAAAGTTTTACAAGTTTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTGAATGGATTAAGAGCCACTTTCCTTCGACCTGGGAACT
                      | | |||  |||        |||  | |  | | || || ||  |||||||  ||     ||       |||  |||||||||||||  |||| ||| | ||||| ||||| |||||||| || ||||||||||| ||||| ||||||||  | || ||||| |||||| |||||||||
gtgagccatacataaaattcttgtttaactttcagcccgcctcttcttttcttatatt-tagtttctattctgaatgcgctccttaactggaattctccagGAACGAGTTATGAAGGTTCTTCAAGTCTGGGCAGACTGGTTCCTATTTTCAGATGCATATGTCAATGGATTGCGGGCTACTTTTCTTCGATCTGGGAACT

upper sequence: GLYMA16G15820.1 (Glycine max), 3'ss of exon 11
lower sequence: EFJ16538 (Selaginella moellendorffii), 3'ss of exon 13
gtaggctgaacaatcatagatttccttgatataatttcttataattctt--attctgtttggtgatctgtctgaaaatat--tccagGAACGAGTGCTGAAAGTTTTACAAGTTTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTGAATGGATTAAGAGCCACTTTCCTTCGACCTGGGAACT
                          | || |   |  |  |  ||| |  |  |||  |    ||   |  | | || |  | ||||| || ||||||||||| ||||| |||||||| ||||||||| | ||| | ||||| || || ||||||||||||| |||||| || ||  |||| | ||
-------------------------gtaatgtgcatcatatttgttcgtgaacgctgactaactatacatacgtatatctcgtgcagGAGCGCGTGCTGAAAGTCTTACAGGTTTGGGCGGACTGGTTTTTATTTACGGATGCCTACGTAAATGGATTAAGAGTCACTTTTCTACGCTCTGGAAGCT

upper sequence: GLYMA16G15820.1 (Glycine max), 3'ss of exon 11
lower sequence: EFJ32251 (Selaginella moellendorffii), 3'ss of exon 13
gtaggctgaacaatcatagatttccttgatataatttcttataattcttattc-tgtttggtgatctgtctgaaaatattccagGAACGAGTGCTGAAAGTTTTACAAGTTTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTGAATGGATTAAGAGCCACTTTCCTTCGACCTGGGAACT
                               |||| |   || ||  || ||| ||   | |||   |    |   | || ||||| || ||||||||||| ||||| |||||||| ||||||||| | ||| | ||||| || || ||||||||||||| |||||| || ||  |||| | ||
------------------------------gtaatgtgc-atcatatttgttcgtgaacgctgactagct--attctcttgcagGAGCGCGTGCTGAAAGTCTTACAGGTTTGGGCGGACTGGTTTTTATTTACGGATGCCTACGTAAATGGATTAAGAGTCACTTTTCTACGCTCTGGAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atataatttcttataattcttattctgtttggtgatctgtctgaaaatattccagGAACGAGTGCTGAAAGTTTTACAAGTTTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTGAATGGATTAAGAGCCACTTTCCTTCGACCTGGGAACT
 ccttgat  putative branch site (score: 5)
     atttcttataattctt  TA-rich tract