1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tcttattgtctctgttatctttgataattgcttcaggtaatgcatcctctcttctagttttaaatgatagaaaactaaaaatgtttcatgtttctggcagCGGCGATCATGACATGTGTGTTCCATACACGGGGAGTCAAGTGTGGACGAGATCAGTTGGATACAAGATTGTTGATGAATGGAGGCCTTGGTCATCCAAT
species | Glycine max |
transcript | GLYMA16G09320.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAGTACCACAAGAACTTAACTTCCAAAGGTTATCGTGCACTTATATTCAG CGGCGATCATGACATGTGTGTTCCATACACGGGGAGTCAAGTGTGGACGAGEST: gi|254339690|gb|GR857815.1|GR857815
genomic: AAGTACCACAAGAACTTAACTTCCAAAGGTTATCGTGCACTTATATTCAGgtgaatttcc ... tttctggcagCGGCGATCATGACATGTGTGTTCCATACACGGGGAGTCAAGTGTGGACGAG
EST: AAGTACCACAAGAACTTAACTTCCAAAGGTTATCGTGCACTTATATTCAG CGGCGATCATGACATGTGTGTTCCATACACGGGGAGTCAAGTGTGGACGAGEST: gi|13479098|gb|BG508441.1|BG508441
genomic: AAGTACCACAAGAACTTAACTTCCAAAGGTTATCGTGCACTTATATTCAGgtgaatttcc ... tttctggcagCGGCGATCATGACATGTGTGTTCCATACACGGGGAGTCAAGTGTGGACGAG
EST: AAGTACCACAAGAACTTAACTTCCAAAGGTTATCGTGCACTTATATTCAG CGGCGATCATGAACATGTGTGTTCCATACACGGGGAGTCAAGTGTGGACEST: gi|192320379|gb|FK013469.1|FK013469
genomic: AAGTACCACAAGAACTTAACTTCCAAAGGTTATCGTGCACTTATATTCAGgtgaatttcc ... tttctggcagCGGCGATCATGA-CATGTGTGTTCCATACACGGGGAGTCAAGTGTGGAC
EST: AAGTACCACAAGAACTTAACTTCCAAAGGTTATCGTGCACTTATATTCAG CGGCGATCATGACATGTGTGTTCCATACACGGGGAGTCAAGTGTGGACGAGEST: gi|5677334|gb|AI938464.1|AI938464
genomic: AAGTACCACAAGAACTTAACTTCCAAAGGTTATCGTGCACTTATATTCAGgtgaatttcc ... tttctggcagCGGCGATCATGACATGTGTGTTCCATACACGGGGAGTCAAGTGTGGACGAG
EST: AAGTACCACAAGAACTTAACTTCCAAAGGTTATCGTGCACTTATATTCAG CGGCGATCATGACATGTGTGTEST: gi|57574399|gb|CX547374.1|CX547374
genomic: AAGTACCACAAGAACTTAACTTCCAAAGGTTATCGTGCACTTATATTCAGgtgaatttcc ... tttctggcagCGGCGATCATGACATGTGTGT
EST: AAGTACCACAAGAACTTAACTTCCAAAGGTTATCGTGCACTTATATTCAG CGGCGATCATGACATGTGTGTTCCATACACGGGGAGTCAAGTGTGGACGAGEST: gi|208332698|gb|GE126947.1|GE126947
genomic: AAGTACCACAAGAACTTAACTTCCAAAGGTTATCGTGCACTTATATTCAGgtgaatttcc ... tttctggcagCGGCGATCATGACATGTGTGTTCCATACACGGGGAGTCAAGTGTGGACGAG
EST: CTTAACTTCCAAAGGTTATCGTGCACTTATATTCAG CGGCGATCATGACATGTGTGTTCCATACACGGGGAGTCAAGTGTGGACGAGEST: gi|57574752|gb|CX547727.1|CX547727
genomic: CTTAACTTCCAAAGGTTATCGTGCACTTATATTCAGgtgaatttcc ... tttctggcagCGGCGATCATGACATGTGTGTTCCATACACGGGGAGTCAAGTGTGGACGAG
EST: AAGTACCACAAGAACTTAACTTCCAAAGGTTATCGTGCACTTATATTCAG CGGCGATCATGACATGTGTGTTCCATACACGGGGAGTCAAGTGTGGACGAG
genomic: AAGTACCACAAGAACTTAACTTCCAAAGGTTATCGTGCACTTATATTCAGgtgaatttcc ... tttctggcagCGGCGATCATGACATGTGTGTTCCATACACGGGGAGTCAAGTGTGGACGAG
cctctcttctagttttaaatgatagaaaactaaaaatgtttcatgtttctggcagCGGCGATCATGACATGTGTGTTCCATACACGGGGAGTCAAGTGTGGACGAGATCAGTTGGATACAAGATTGTTGATGAATGGAGGCCTTGGTCATCCAAT
aactaaa putative branch site (score: 2)
tgtttct putative PPT
ttttaaatgatagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttattgtctctgttatctttgataattgcttcaggtaatgcatcctctcttctagttttaaatgatagaaaactaaaaatgtttcatgtttctggcagCGGCGATCATGACATGTGTGTTCCATACACGGGGAGTCAAGTGTGGACGAGATCAGTTGGATACAAGATTGTTGATGAATGGAGGCCTTGGTCATCCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - -gtctctg
- - - - - - - - - - - - - - tgcttca
- - - - - - - - - - - - - - - - - - gtaatgc