1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaattctaaatcaatctagacttcaaacttcaaagccatcctttcatatttagattgtttaactgggtgacttaacaatagcatgttaatgatgttgcagGGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATCTGCAATGAAGAAATCTTGTGTTCCTGAAGTTGTTTCACAGTTGGGTTTA
species | Glycine max |
transcript | GLYMA15G41330.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCAGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAG GGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATCEST: gi|21600907|gb|BQ611238.1|BQ611238
genomic: TCAGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAGgtgcatatat ... gatgttgcagGGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATC
EST: TCAGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAG GGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATCEST: gi|213589421|gb|DB981211.1|DB981211
genomic: TCAGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAGgtgcatatat ... gatgttgcagGGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATC
EST: TCAGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAG GGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATCEST: gi|193545387|gb|FK499946.1|FK499946
genomic: TCAGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAGgtgcatatat ... gatgttgcagGGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATC
EST: GGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAG GGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATCEST: gi|193456857|gb|FK422679.1|FK422679
genomic: GGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAGgtgcatatat ... gatgttgcagGGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATC
EST: CAAGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAG GGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATCEST: gi|10254076|gb|BE821842.1|BE821842
genomic: C-AGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAGgtgcatatat ... gatgttgcagGGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATC
EST: TCAGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAG GGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATCEST: gi|192305317|gb|FG994013.1|FG994013
genomic: TCAGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAGgtgcatatat ... gatgttgcagGGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATC
EST: TCAGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAG GGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATCEST: gi|193730275|gb|FK667447.1|FK667447
genomic: TCAGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAGgtgcatatat ... gatgttgcagGGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATC
EST: TCAGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAA-GTTCAG GGTATTGACACCAGCTGAAATTGATGAACTATTTGGCTGAAEST: gi|193414860|gb|FK378756.1|FK378756
genomic: TCAGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAGgtgcatatat ... gatgttgcagGGTATTGACACCAGCTGAAATTGATGA-CTATTTGGCTGAA
EST: CAAGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAG GGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATCEST: gi|193518565|gb|FK472706.1|FK472706
genomic: CA-GGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAGgtgcatatat ... gatgttgcagGGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATC
EST: TCAGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAG GGTATTGACACCAGCTGAAATTGACGACTATTTGGCTGAAGTAGAATAATCEST: gi|23725769|gb|BU760849.1|BU760849
genomic: TCAGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAGgtgcatatat ... gatgttgcagGGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATC
EST: TCAGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAG GGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATC
genomic: TCAGGAAAAAACATTGAAATTGGCATAATTGGTGCTGATAAAAAGTTCAGgtgcatatat ... gatgttgcagGGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATC
atatttagattgtttaactgggtgacttaacaatagcatgttaatgatgttgcagGGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATCTGCAATGAAGAAATCTTGTGTTCCTGAAGTTGTTTCACAGTTGGGTTTA
tgttaat putative branch site (score: 3)
attgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattctaaatcaatctagacttcaaacttcaaagccatcctttcatatttagattgtttaactgggtgacttaacaatagcatgttaatgatgttgcagGGTATTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTAGAATAATCTGCAATGAAGAAATCTTGTGTTCCTGAAGTTGTTTCACAGTTGGGTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - tcaaact
- - - - - - - - - - - - - - - caaagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgtt