1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaatatacatgcagtgcgttcctttttatgatctttataaacatccaatctaaaaatcataaatgatggacaactatattgtgattctctctgttgacagTTATCTGAAGCATCTCCAGTGCTTGTTAACAAATTGATACCTGACCACGTGAAGCGGCAAATAGGGCTGCAATTTGTTCCTCCAGCAGGATCATGATGAT
species | Glycine max |
transcript | GLYMA15G09090.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCCTGCCAAATGGTCGTCCATTTCNTNNNCTATTTAACTTCAAACAGGAA TTATCTGAAGCATCTCCAGTGCTTGTTAACAAATTGATACCTGACCACGTGEST: gi|10255492|gb|BE823258.1|BE823258
genomic: GCCTGCCAAATGGTCGTCCATTTCCTCCTCTATTTAACTTCAAACAGGAAgtaagtcctt ... ctgttgacagTTATCTGAAGCATCTCCAGTGCTTGTTAACAAATTGATACCTGACCACGTG
EST: ATTTAACTTCAAACAGGAA TTANNTGAAGCATNNCCAGTGCTTGTTAACAAATTGATACCTGACCACGTGEST: gi|254330723|gb|GR841988.1|GR841988
genomic: ATTTAACTTCAAACAGGAAgtaagtcctt ... ctgttgacagTTATCTGAAGCATCTCCAGTGCTTGTTAACAAATTGATACCTGACCACGTG
EST: GCCTGCCAAATGGTCGTCCATTTCCTCCTCTATTTAACTTCAAACAGGAA TTATCTGAAGCATCTCCAGTGCTTGTTAACAAATTGATACCTGACCACGTGEST: gi|254329846|gb|GR839399.1|GR839399
genomic: GCCTGCCAAATGGTCGTCCATTTCCTCCTCTATTTAACTTCAAACAGGAAgtaagtcctt ... ctgttgacagTTATCTGAAGCATCTCCAGTGCTTGTTAACAAATTGATACCTGACCACGTG
EST: GCCTGCCAAATGGTCGTCCATTTCCTCCTCTATTTAACTTCAAACAGGAA TTATCTGAAGCATCTCCAGTGCTTGTTAACAA-TTGATACCTGACCACGTGEST: gi|7030035|gb|AW459818.1|AW459818
genomic: GCCTGCCAAATGGTCGTCCATTTCCTCCTCTATTTAACTTCAAACAGGAAgtaagtcctt ... ctgttgacagTTATCTGAAGCATCTCCAGTGCTTGTTAACAAATTGATACCTGACCACGTG
EST: GCCTGCCAAATGGTCGTCCATTTCCTCCTCTATTTAACTTCAAACAGGAA TTATCTGAAGCATCTCCAGTGCTTGTTAACAAATTGATACCTGACCACGTGEST: gi|23731206|gb|BU763715.1|BU763715
genomic: GCCTGCCAAATGGTCGTCCATTTCCTCCTCTATTTAACTTCAAACAGGAAgtaagtcctt ... ctgttgacagTTATCTGAAGCATCTCCAGTGCTTGTTAACAAATTGATACCTGACCACGTG
EST: GCCTGCCAAATGGTCGTCCATTTCCTCCTCTATTTAACTTCAAACAGGAA TTATCTGAAGCATCTCCAGTGCTTGTTAACAAATTGATACCTGACCACGTGEST: gi|12774190|gb|BG239117.1|BG239117
genomic: GCCTGCCAAATGGTCGTCCATTTCCTCCTCTATTTAACTTCAAACAGGAAgtaagtcctt ... ctgttgacagTTATCTGAAGCATCTCCAGTGCTTGTTAACAAATTGATACCTGACCACGTG
EST: GCCTGCCAAATGGTCGTCCATTTCCTCCTCTATTTAACTTCAAACAGGAA TTATCTGAAGCATCTCCAGTGCTTGTTAACAAATTGATACCTGACCACGTGEST: gi|151404035|gb|EV273845.1|EV273845
genomic: GCCTGCCAAATGGTCGTCCATTTCCTCCTCTATTTAACTTCAAACAGGAAgtaagtcctt ... ctgttgacagTTATCTGAAGCATCTCCAGTGCTTGTTAACAAATTGATACCTGACCACGTG
EST: CTCTATTTAACTTCAAACAGGAA TTATCTGAAGCATCTCCAGTGCTTGTTAACAAATTGATACCTGACCACGTGEST: gi|193615193|gb|FK560613.1|FK560613
genomic: CTCTATTTAACTTCAAACAGGAAgtaagtcctt ... ctgttgacagTTATCTGAAGCATCTCCAGTGCTTGTTAACAAATTGATACCTGACCACGTG
EST: GCCTGCCAAATGGTCGTCCATTTCCTCCTCTATTTAACTTCAAACAGGAA TTATCTGAAGCATCTCCAGTGCTTGTTAGCAAATTGATACCTGACCACGTG
genomic: GCCTGCCAAATGGTCGTCCATTTCCTCCTCTATTTAACTTCAAACAGGAAgtaagtcctt ... ctgttgacagTTATCTGAAGCATCTCCAGTGCTTGTTAACAAATTGATACCTGACCACGTG
caatctaaaaatcataaatgatggacaactatattgtgattctctctgttgacagTTATCTGAAGCATCTCCAGTGCTTGTTAACAAATTGATACCTGACCACGTGAAGCGGCAAATAGGGCTGCAATTTGTTCCTCCAGCAGGATCATGATGAT
atctaaa putative branch site (score: 3)
ttctctctgtt putative PPT
taaaaatcataaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatatacatgcagtgcgttcctttttatgatctttataaacatccaatctaaaaatcataaatgatggacaactatattgtgattctctctgttgacagTTATCTGAAGCATCTCCAGTGCTTGTTAACAAATTGATACCTGACCACGTGAAGCGGCAAATAGGGCTGCAATTTGTTCCTCCAGCAGGATCATGATGAT
- - - acatgca
- - - - - - - tgcgttc
- - - - - - - - - - - - - - - - - - - - acatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgatgg