Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgcacatccttatagtaaatctataagcaattatagactagaatattcagcttcataaagttatttctgaatactgtatgcttggttatcataaccctgagaaagatctttttgctgatttcattgtatcatcatgtgtacttgactttcatggctttggtctcaagTAATCAGTGCATATGGGTTACAGATTGTTGTAGTGGTTGGCTGGAAGGCCCTAATAAGGTGTATATCCCATTTCTAGCTTGTGGTGACCTCAGTGGGTAT

Basic information

species Glycine max
transcript GLYMA15G07970.4
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G07970.4 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os06g49140.1 (Oryza sativa), 3'ss of exon 10
gtatatgcacatccttatagtaaatctataagcaattatagactagaatattcagcttcataaagttatttctgaatactgtatgcttggttatcataaccctgagaaagatctttttgctgatttcattgtatcatcatgtgtacttgactttcatggctttggtctcaagTAATCAGTGCATATGGGTTACAGATTGTTGTAGTGGTTGGCTGGAAGGCCCTAATAAGGTGTATATCCCATTTCTAGCTTGTGGTGACCTCAGTGGGTAT-----------------------
                                                                                                |||     | |||  ||    |||   ||      |  || |      || |||  | || |      | ||||   |||     ||| ||     |||| ||  | ||||| ||| | || || || || ||||| || ||||||||||| ||||| |||||||||||||| ||                        
-----------------------------------------------------------------------------------------------gtaatggc-acaaaactcaaaatgccatttgtgaaatgccaaccca-acacatga--tacaggat----gcctcattcaattttgtcatgtg-----cagACTGCAGAAGTGGATGGTTAGAGGGACCAAACAAGGTCTACATCCCATTTCTGGCTTGCGGTGACCTCAGTGGTTACGATTCGGATCGTTCTTACCCACT

upper sequence: GLYMA15G07970.4 (Glycine max), 3'ss of exon 11
lower sequence: Vv08s0007g01960.t01 (Vitis vinifera), 3'ss of exon 10
gtatatgcacatccttatagtaaatctataagcaattatagactagaatattcagcttcataaagttatttctgaatactgtatgcttggttatcataaccctgagaaagatctttttgctgatttcattgtatcatcatgtgtacttgactttcatggctttggtctcaagTAATCAGTGCATATGGGTTACAGATTGTTGTAGTGGTTGGCTGGAAGGCCCTAATAAGGTGTATATCCCATTTCTAGCTTGTGGTGACCTCAGTGGGTAT-----------------------
                                                                                  | ||   ||| | | | |  |||    |    || |   ||  |  |||  | ||       |  |||   | |||  |||     | | || |   |||||       ||||||||  | || || ||| ||||||| || ||||||||||| || |||||| | |||||||| |||||||||||||||                       
---------------------------------------------------------------------------------caggccaagtt-ttacatctttgattgggcctgttcttaggagattcttgcttaat-------agatgatagtgatgtttttccctcctaatatttgttgcatg------acagATTGCAGAAGCGGGTGGTTGGAAGGGCCAAATAAGGTGTACATTCCATTTTTGGCTTGTGGAGACCTCAGTGGGTATGACTCAGACCAGTCATATCCTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgatttcattgtatcatcatgtgtacttgactttcatggctttggtctcaagTAATCAGTGCATATGGGTTACAGATTGTTGTAGTGGTTGGCTGGAAGGCCCTAATAAGGTGTATATCCCATTTCTAGCTTGTGGTGACCTCAGTGGGTAT
     atttcatt  TA-rich tract