1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...aatattcaatattttttaaattgttgaaattagttgcttctaactaatccatactgcccgttcctcattattaattattaactaatctgtcatgcttcagGCCCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACTATAGATGAAAGTCTGAGGAAACATTTAACTGAACACATGAAAGAGGGAAGCATTTTGAGTG
species | Glycine max |
transcript | GLYMA13G09970.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AACAAGTGGAAAGAATAACAGATGTGGATATTGATTCAGACAGAGTACAG GCCCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACTATAGATGAAAGTEST: gi|207767927|gb|GD740339.1|GD740339
genomic: AACAAGTGGAAAGAATAACAGATGTGGATATTGATTCAGACAGAGTACAGgtttgaccta ... catgcttcagGCCCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACTATAGATGAAAGT
EST: AACAAGTGGAAAGAATAACAGATGTGGATATTGATTCAGACAGAGTACAG GCCCGGTCCCTGTTTGTCAAGAAACCTAAATTTACAAGACTATAGEST: gi|16348200|gb|BI973795.1|BI973795
genomic: AACAAGTGGAAAGAATAACAGATGTGGATATTGATTCAGACAGAGTACAGgtttgaccta ... catgcttcagGCCCGGTCCCTGTTTGTCAAGAA-CCTAAATTT-CAAGACTATAG
EST: AACAAGTGGAAAGAATAACAGATGTGGATATTGATTCAGACAGAGTACAG GCCCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACTATAGATGAAAGTEST: gi|10709774|gb|BF009498.1|BF009498
genomic: AACAAGTGGAAAGAATAACAGATGTGGATATTGATTCAGACAGAGTACAGgtttgaccta ... catgcttcagGCCCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACTATAGATGAAAGT
EST: AACAAGTGGAAAGAATAACAGATGTGGATATTGATTCAGACAGAGTACAG GCCCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACTATAGATGAAAGTEST: gi|15287874|gb|BI471765.1|BI471765
genomic: AACAAGTGGAAAGAATAACAGATGTGGATATTGATTCAGACAGAGTACAGgtttgaccta ... catgcttcagGCCCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACTATAGATGAAAGT
EST: AACAAGTGGAAAGAATAACAGATGTGGATATTGATTCAGACAGAGTACAG GCCCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACTATAGATGAAAGT
genomic: AACAAGTGGAAAGAATAACAGATGTGGATATTGATTCAGACAGAGTACAGgtttgaccta ... catgcttcagGCCCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACTATAGATGAAAGT
aatccatactgcccgttcctcattattaattattaactaatctgtcatgcttcagGCCCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACTATAGATGAAAGTCTGAGGAAACATTTAACTGAACACATGAAAGAGGGAAGCATTTTGAGTG
attattaattattaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatattcaatattttttaaattgttgaaattagttgcttctaactaatccatactgcccgttcctcattattaattattaactaatctgtcatgcttcagGCCCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACTATAGATGAAAGTCTGAGGAAACATTTAACTGAACACATGAAAGAGGGAAGCATTTTGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - ccatact