1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatgtttggaggatatcttcagtaaatttagtttatttagttgttttaatgatcatttgtgttgttcgaaatgcagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGCAGGCAACCCATATGGAGGTTCCAATCCACTCACAATATCCAGGTCCGAA
species | Glycine max |
transcript | GLYMA10G37210.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAG AAGCAAGGAATEST: gi|298196130|gb|HO044521.1|HO044521
genomic: TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAGgtaatgtttg ... cgaaatgcagAAGCAAGGAAT
EST: TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAG AAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAEST: gi|207784422|gb|GD757277.1|GD757277
genomic: TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAGgtaatgtttg ... cgaaatgcagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAA
EST: TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAG AAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGC
genomic: TCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAGgtaatgtttg ... cgaaatgcagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGC
gtaaatttagtttatttagttgttttaatgatcatttgtgttgttcgaaatgcagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGCAGGCAACCCATATGGAGGTTCCAATCCACTCACAATATCCAGGTCCGAA
ttttaat putative branch site (score: 3)
tttagtttatttagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtttggaggatatcttcagtaaatttagtttatttagttgttttaatgatcatttgtgttgttcgaaatgcagAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGCAGGCAACCCATATGGAGGTTCCAATCCACTCACAATATCCAGGTCCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG