1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgagcgtagttttactgaaccagtagcagtagctgtactacttttgatggattctagttctatctcttgtcgggagtagcagtttacactgaattcttacttaagattgttgttgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGGCTCAAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAG
species | Glycine max |
transcript | GLYMA09G28650.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGEST: gi|193547528|gb|FK501465.1|FK501465
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGEST: gi|192309233|gb|FG999124.1|FG999124
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGEST: gi|58017480|gb|CX704222.1|CX704222
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGEST: gi|209714673|gb|BW674236.1|BW674236
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGEST: gi|193639863|gb|FK592320.1|FK592320
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGEST: gi|22927071|gb|BU544210.1|BU544210
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: TGAGGGCATAGAGAAG TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATNNCACGAACTTTGEST: gi|192309232|gb|FG999123.1|FG999123
genomic: TGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGEST: gi|26048688|gb|CA785141.1|CA785141
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGEST: gi|193619682|gb|FK572642.1|FK572642
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGEST: gi|193521393|gb|FK481638.1|FK481638
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGEST: gi|207803832|gb|GD772791.1|GD772791
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGEST: gi|193529449|gb|FK487832.1|FK487832
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: TGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGEST: gi|208325439|gb|GE124105.1|GE124105
genomic: TGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGEST: gi|15199729|gb|BI423980.1|BI423980
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGEST: gi|208270977|gb|GE067801.1|GE067801
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGEST: gi|208192695|gb|GD989774.1|GD989774
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCAATACCACGAACTTT
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCA-TACCACGAACTTT
gtcgggagtagcagtttacactgaattcttacttaagattgttgttgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGGCTCAAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAG
aattctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcgtagttttactgaaccagtagcagtagctgtactacttttgatggattctagttctatctcttgtcgggagtagcagtttacactgaattcttacttaagattgttgttgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTGGCTCAAAATTGTGGAGTAAATGTCATCCGGACTATGACTGCTCTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG