1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ttttactatgtgtctggaggtgttgtctcaagtgttgtggacactcaatgtgaaaaataatatcatatttataaggttggcatttctatttgcttgacagGTCAAGATTATTACAGATGAAGAGAGTGTGAATGAAAATACTGGAATGGGTGAGCTTTGCTTTAAAAGCCCTTCGTTGTTTAAAGAATATTGGAAACTTC
species | Glycine max |
transcript | GLYMA08G21840.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAGGTGAGCGCAAACCTGGAACTGTTGGCAAACCATTTCCCGGTATACAG GTCAAGATTATTACAGATGAAGAGAGTGEST: gi|192333243|gb|FK026124.1|FK026124
genomic: AAGGTGAGCGCAAACCTGGAACTGTTGGCAAACCATTTCCCGGTATACAGgttagttgag ... tgcttgacagGTCAAGATTATTACAGATGAAGAGAGTG
EST: AAGGTGAGTGCAAACCTGGAACTGTTGGCAAACCATTTCCCGGTATACAG GTCAAGATTATTACAGATGAAGAGAGTGTGAATGAAAATACTGGAATGGGT
genomic: AAGGTGAGCGCAAACCTGGAACTGTTGGCAAACCATTTCCCGGTATACAGgttagttgag ... tgcttgacagGTCAAGATTATTACAGATGAAGAGAGTGTGAATGAAAATACTGGAATGGGT
caatgtgaaaaataatatcatatttataaggttggcatttctatttgcttgacagGTCAAGATTATTACAGATGAAGAGAGTGTGAATGAAAATACTGGAATGGGTGAGCTTTGCTTTAAAAGCCCTTCGTTGTTTAAAGAATATTGGAAACTTC
tttctattt CT-rich tract
tgaaaaataatatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttactatgtgtctggaggtgttgtctcaagtgttgtggacactcaatgtgaaaaataatatcatatttataaggttggcatttctatttgcttgacagGTCAAGATTATTACAGATGAAGAGAGTGTGAATGAAAATACTGGAATGGGTGAGCTTTGCTTTAAAAGCCCTTCGTTGTTTAAAGAATATTGGAAACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA