1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaaatatctgaccttctcttattaaggcatggttatgtatctctatgtatacgctgaatcatttttatgctacctggactgacttgctattgtaacttgctttttcagAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCTTTGCGACAGTATGGGCCAGCACACAAGAGCTGTTTCCTTTCTCCTCCT
species | Glycine max |
transcript | GLYMA06G15870.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TATGCAACAAAGCCAATTCCCGTAACTTCACGTACAGTAAGGAGCCCAAG AGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCEST: gi|298172289|gb|HO021881.1|HO021881
genomic: TATGCAACAAAGCCAATTCCCGTAACTTCACGTACAGTAAGGAGCCCAAGgtaaaatatc ... gctttttcagAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCC
EST: TATGCAACAAAGCCAATTCCCGTAACTTCACGTACAGTAAGGAGCCCAAG AGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCEST: gi|27426111|gb|CA937631.1|CA937631
genomic: TATGCAACAAAGCCAATTCCCGTAACTTCACGTACAGTAAGGAGCCCAAGgtaaaatatc ... gctttttcagAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCC
EST: TATGCAACAAAGCCAATTCCCGTAACTTCACGTACAGTAAGGAGCCCAAG AGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCEST: gi|9820707|gb|BE556217.1|BE556217
genomic: TATGCAACAAAGCCAATTCCCGTAACTTCACGTACAGTAAGGAGCCCAAGgtaaaatatc ... gctttttcagAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCC
EST: TATGCAACAAAGCCAATTCCCGTAACTTCACGTACAGTAAGGAGCCCAAG AGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCEST: gi|15203139|gb|BI425907.1|BI425907
genomic: TATGCAACAAAGCCAATTCCCGTAACTTCACGTACAGTAAGGAGCCCAAGgtaaaatatc ... gctttttcagAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCC
EST: TATGCAACAAAGCCAATTCCCGTAACTTCACGTACAGTAAGGAGCCCAAG AGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCC
genomic: TATGCAACAAAGCCAATTCCCGTAACTTCACGTACAGTAAGGAGCCCAAGgtaaaatatc ... gctttttcagAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCC
ctgaatcatttttatgctacctggactgacttgctattgtaacttgctttttcagAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCTTTGCGACAGTATGGGCCAGCACACAAGAGCTGTTTCCTTTCTCCTCCT
ttgtaac putative branch site (score: 2)
cttgctttttc CT-rich tract
tcatttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatatctgaccttctcttattaaggcatggttatgtatctctatgtatacgctgaatcatttttatgctacctggactgacttgctattgtaacttgctttttcagAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCTTTGCGACAGTATGGGCCAGCACACAAGAGCTGTTTCCTTTCTCCTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC