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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcaatctcacatgaagctgtattgtagtttattgttctttttgtttactcttttactttaattaatgatgcatcttgaagaaactatttatttccaacaattatatctagcaaattcttagaaggttcttcaactgtatgcttattgttgctatgtttcacttgtagCCAATACGATCACCTTTGGCACCAGGTGTCCTCATTACTGGAATTGTACCTTCAGAGTCATCAATATTTAAAAGTGCATTGCATCCTTTGCGCCTTACTT

Basic information

species Glycine max
transcript GLYMA06G10090.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10090.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os05g08810.1 (Oryza sativa), 3'ss of exon 11
gtatcaatctcacatgaagctgtattgtagtttattgttctttttgtttactcttttactttaattaatgatgcatcttgaagaaactatttatttccaacaattatatctagcaaattcttagaaggttcttcaactgtatgcttattgttgctatgtttcacttgtagCCAATACGATCACCTTTGGCACCAGGTGTCCTCATTACTGGAATTGTACCTTCAGAGTCATCAATATTTAAAAGTGCATTGCATCCTTTGCGCCTTACTT
                         || |  |||||      ||  | |  | | |  ||    ||  | |    |  |  ||||||     || ||  | | ||     || |   |     |  | | ||| ||||| |||  |   |||      | | | ||  ||||||| || ||||| || ||||||  ||| ||| |||||||  || |||||  ||| ||||| |||||||||||||| |||||||||||||||||| | |
------------------------gtgcaacttatttcatcattaatgtgttgtctgtctcctgtttttca---gtgctagagaaac-----atatc--atagttcagattaacttgt-----gtggttgcttgaactg-atgagttccgttt-----tattaatttcagCCAATTCGTTCACCATTAGCACCAACTGTTCTCCTTACTGGGGTTATACCTCAAGAATCATCTATATTTAAAAGTGCCTTGCATCCTTTGCGCCTTGCCT

upper sequence: GLYMA06G10090.1 (Glycine max), 3'ss of exon 11
lower sequence: AT1G60490.1 (Arabidopsis thaliana), 3'ss of exon 11
gtatcaatctcacatgaagctgtattgtagtttattgttctttttgtttactcttttactttaattaatgatgcatcttgaagaaactatttatttccaacaattatatctagcaaattcttagaaggttcttcaactgtatgcttattgttgctatgtttcacttgtagCCAATACGATCACCTTTGGCACCAGGTGTCCTCATTACTGGAATTGTACCTTCAGAGTCATCAATATTTAAAAGTGCATTGCATCCTTTGCGCCTTACTT
                                            |  || | || |   ||||| |  | |   ||       ||  |  |  | ||||| |||  | |    ||| ||  |  ||    | |    | |   ||| | | |  | |||||  |||  |||| || ||||||||  |  | ||   ||| ||||| |  || |||||  |   ||| |||||| | ||||||||||||||||||||| ||||||||||||
-------------------------------------------gtactttcactatggttttaactggtaactaatgcctttaaatgtgatgttatccaagaat-gtctgagtcaagtttctctaa---cccttgtgtattaacttttggat--tttgtttttctttcagCCTATTCGATCACCGCTTACCCCTAATGTTCTCATAAAGGGGATTGTGGCAGGAGAATCATCACTCTTTAAAAGTGCATTGCATCCTCTGCGCCTTACTT

upper sequence: GLYMA06G10090.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 11
gtatcaatctcacatgaagctgtattgtagtttattgttctttttgtttactcttttactttaattaatgatgcatcttgaagaaactatttatttccaacaattatatctagcaaattcttagaaggttcttcaactgtatgcttattgttgctatgtttcacttgtagCCAATACGATCACCTTTGGCACCAGGTGTCCTCATTACTGGAATTGTACCTTCAGAGTCATCAATATTTAAAAGTGCATTGCATCCTTTGCGCCTTACTT
||||   | | |    ||| ||  |     || ||  |    | || | ||| | | |  ||  |     ||  || |||  | |      |||  |   ||  |   | || ||  | |||  ||   | |  || |  |    | ||  || | |||| |||||  ||||||||||||||||  | ||||||||||| ||||| ||||| || || |||||||| ||||||||||| || |||||  |||||||||| ||||| ||||
gtatttgtttgattcaaagttgact----attgatcttgtcatctgctaactttctgagctttgtctgacatttattttgttgca-tcggatatagctttcagat---tgtaacagttgcttttaaatatttataatttgagatgtgtt--tgatttgttacactttcagCCAATACGATCACCAGTTGCACCAGGTGTGCTCATCACTGGTATCGTGCCTTCAGAATCATCAATATTCAAGAGTGCTCTGCATCCTTTACGCCTGACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattcttagaaggttcttcaactgtatgcttattgttgctatgtttcacttgtagCCAATACGATCACCTTTGGCACCAGGTGTCCTCATTACTGGAATTGTACCTTCAGAGTCATCAATATTTAAAAGTGCATTGCATCCTTTGCGCCTTACTT
                                           tttcactt  CT-rich tract
                             ttattgtt  TA-rich tract