1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ataatagaataaactaaatttgtaattttaactactcattctattattatggttataatttgtcatgtctaattgtctatcattgtaaatttattaacagATTCTTAGGAGGCACGGAGATATAATAAAAAGAACAGTTGATGGATATATTGTTGTGCAAGGGAGGGCTGATGACACCATGAATCTTGGTGGAATAAAG
species | Glycine max |
transcript | GLYMA05G29030.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGATCATGAGAAGGTTTACTTTAAGGGAATGCCCATTTATAAGGAGAAG ATTCTTAGGAGGCACGGAGATATAATAAAAAGAACAGTTGATGGATATATTEST: gi|308098274|gb|HO760015.1|HO760015
genomic: CTGATCATGAGAAGGTTTACTTTAAGGGAATGCCCATTTATAAGGAGAAGgtagaacttc ... ttattaacagATTCTTAGGAGGCACGGAGATATAATAAAAAGAACAGTTGATGGATATATT
EST: CTGATCATGAGAAGGTTTACTTTAAGGGAATGCCCATTTATAAGGAGAAG ATTCTTAGGAGGCACGGAGATATAATAAAAAGAACAGTTGATGGATATATTEST: gi|6455429|gb|AW186112.1|AW186112
genomic: CTGATCATGAGAAGGTTTACTTTAAGGGAATGCCCATTTATAAGGAGAAGgtagaacttc ... ttattaacagATTCTTAGGAGGCACGGAGATATAATAAAAAGAACAGTTGATGGATATATT
EST: CTGATCATGAGAAGGTTTACTTTAAGGGAATGCCCATTTATAAGGAGAAG ATTCTTAGGAGGCACGGAGATATAATAAAAAGAACAGTTGATGGATATATT
genomic: CTGATCATGAGAAGGTTTACTTTAAGGGAATGCCCATTTATAAGGAGAAGgtagaacttc ... ttattaacagATTCTTAGGAGGCACGGAGATATAATAAAAAGAACAGTTGATGGATATATT
attatggttataatttgtcatgtctaattgtctatcattgtaaatttattaacagATTCTTAGGAGGCACGGAGATATAATAAAAAGAACAGTTGATGGATATATTGTTGTGCAAGGGAGGGCTGATGACACCATGAATCTTGGTGGAATAAAG
gtctaat putative branch site (score: 3)
taattgtctatcattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatagaataaactaaatttgtaattttaactactcattctattattatggttataatttgtcatgtctaattgtctatcattgtaaatttattaacagATTCTTAGGAGGCACGGAGATATAATAAAAAGAACAGTTGATGGATATATTGTTGTGCAAGGGAGGGCTGATGACACCATGAATCTTGGTGGAATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - gaataaac
- - - - - - - - - - - - - - - - - ctcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtc