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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccatggtttcctaagacaacattatgctttatttggctttgttatgttttctctgcaaatttttggatttgaaatagcaatatttggcagtttgtattctttgctctcctttatcatgtggacattattttggattttgtgaactgcagGAGTTTTGACTGGTCTATCAGTAAAGTCCTCCAGTTTGACAGTCCAACAGTTTGGGGTCAAGTCAATGTCCTTTGATTGCCCTTGGCTCCTACAAGGTTC

Basic information

species Glycine max
transcript GLYMA03G39210.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4305587|gb|AI443783.1|AI443783
EST:     TCTGGTGGATTCGACTTTAATTAGAAG                         GAGTTTTGACTGGTCTATCAGTAAAGTCCTCCAGTTTGACAGTCCAACAGT
genomic: TCTGGTGGATTCGACTTTAATTAGAAGgtatccatgg ... tgaactgcagGAGTTTTGACTGGTCTATCAGTAAAGTCCTCCAGTTTGACAGTCCAACAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattctttgctctcctttatcatgtggacattattttggattttgtgaactgcagGAGTTTTGACTGGTCTATCAGTAAAGTCCTCCAGTTTGACAGTCCAACAGTTTGGGGTCAAGTCAATGTCCTTTGATTGCCCTTGGCTCCTACAAGGTTC
                             attattttggatttt  TA-rich tract