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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attctaaaccaatctagacttcaaacttcaaaatcatccttatatacttctattgtttaattgggtgattaataataatagcatgccaataatgttgcagGGTATTGACACCAGCCGAAATTGATGATTATTTGGCTGAAGTAGAATAATGTGCAATGAGGAAATCGTGTGTTCCTGAATTTGTTTTTTGTTTCACAGTT

Basic information

species Glycine max
transcript GLYMA03G16660.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G16660.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv01s0011g01960.t01 (Vitis vinifera), 3'ss of exon 10
--attctaaaccaatctagacttcaaacttcaaaatcatccttatatacttct-attgtttaattgggtgattaataataatagcatgccaataatgttgcagGGTATTGACACCAGCCGAAATTGATGATTATTTGGCTGAAGTAGAATAATGTGCAATGAGG--AAATCGTGTGTTCCTGAATTTGTTTTTTGTTTCACAGTT
   || |||     ||  || |   |  |||  |||  |    | ||  |||  ||| |||  |    |  | | | |   |         | |  |||||||||| ||||||||||| ||||||||||| |||||||||||||| || ||   |||  ||     | |       ||   |||   |          || |   
tgtttataagatgttcatgatt---agtttctgaattctggacacatctttccgattattttttatacttctgactgagttttcttctgttacatggttgcagGGTCTTGACACCAGCTGAAATTGATGACTATTTGGCTGAAGTGGAGTAGCTTGCCCTGTTTCCAGAAAACACTTTGAAGAAAAGGAAAACAAAAACAAAA--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411475|gb|EV281286.1|EV281286
EST:     TCAGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAATTTCAG                         GGTATTGACACCAGCCGAAATTGATGATTATTTGGCT
genomic: TCAGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAATTTCAGgtgcatatct ... aatgttgcagGGTATTGACACCAGCCGAAATTGATGATTATTTGGCT
EST: gi|151413158|gb|EV282966.1|EV282966
EST:     TCAG-AAAAA-CATTGAAATTGGCATAATCGGTGCTGATAAAAATTTCAG                         G-TATTGACACCAGCCGAAATTGATGATTATTTGGCTGA-GTA-AATAATG
genomic: TCAGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAATTTCAGgtgcatatct ... aatgttgcagGGTATTGACACCAGCCGAAATTGATGATTATTTGGCTGAAGTAGAATAATG
EST: gi|6747141|gb|AW317597.1|AW317597
EST:     TCTGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAATTTCAG                         GGTATTGACACCAGCCGAAATTGATGATTATTTGGCTGAAGTAGAATAATG
genomic: TCAGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAATTTCAGgtgcatatct ... aatgttgcagGGTATTGACACCAGCCGAAATTGATGATTATTTGGCTGAAGTAGAATAATG
EST: gi|22933042|gb|BU550181.1|BU550181
EST:     TCAGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAATTTCAG                         GGTATTGACACCAGCCGAAATTGATGATTATTTGGCTGAAGTAGAATAATG
genomic: TCAGGAAAAAACATTGAAATTGGCATAATCGGTGCTGATAAAAATTTCAGgtgcatatct ... aatgttgcagGGTATTGACACCAGCCGAAATTGATGATTATTTGGCTGAAGTAGAATAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttctattgtttaattgggtgattaataataatagcatgccaataatgttgcagGGTATTGACACCAGCCGAAATTGATGATTATTTGGCTGAAGTAGAATAATGTGCAATGAGGAAATCGTGTGTTCCTGAATTTGTTTTTTGTTTCACAGTT
                     gattaat  putative branch site (score: 3)
                      attaataataatagca  TA-rich tract