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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...accaatcatttatatttttactagggataagttagacaacaccttctatgtgccttacaattggagtttgactctaagccacaaccttattctgtttcagGGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG

Basic information

species Glycine max
transcript GLYMA02G01930.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01930.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os03g21950.1 (Oryza sativa), 3'ss of exon 11
accaatcatttatatttttactagggataagttagacaacaccttc-tatgtgccttacaattggagtttgactctaagccacaaccttattctgtttcagGGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG
          ||    | || |     | | |    ||    ||   |  |  |  | | ||      |||  | |||    | || |   |||  | ||||| || |||||||| |||||||||||||| ||||| ||||| ||||| |||
---------gtaagactgtattgcatttgattgtttcagtttctcaattagcactgtgctatcaagcattggttttaa----ctacttccatct--tacagGGAAAAGTTAACCCTACCCAGTGTGAGGCCTTGACCATGGTTTGTGCTCAG

upper sequence: GLYMA02G01930.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G010823_T01 (Zea mays), 3'ss of exon 11
accaatcatttatatttttactagggataagttagacaacaccttctatgtgccttacaattggagtttg-actct-aagccacaaccttattctgt----ttcagGGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG
            ||     |||     ||  | |    |    || | | ||     |||  | ||   | | | | ||||  |    | |   |||    |||||||||| ||||| || ||||||||||||||| |||| ||||| |||||||||
-----------gtaagcagactgttattatatcatgatatggtttttgtatgttgatcaacggaagacagcattgtgaagcttctgtttcaacttgtacttttcagGGGAAAGTTAATCCAACCCAGTGTGAGGCTCTGACAATGGTTTGTGCACAG

upper sequence: GLYMA02G01930.1 (Glycine max), 3'ss of exon 11
lower sequence: AT2G47510.1 (Arabidopsis thaliana), 3'ss of exon 12
accaatcatttatatttttactagggataagttagacaacaccttctatgtgccttacaattgga---gtttgactctaagccacaaccttattctgtttcagGGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG
                     || | ||    |   |     ||  | ||| | || |  ||  |   ||||   |  ||   |     |   ||| | |||||||||||| || || || ||||||||||| ||||| ||||| |||||||||
--------------------gtatgaatgcaatcttcctttgctcttctgtccttttctttttcactagttttgattcaaatgaatttttatctctttctcagGGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAG

upper sequence: GLYMA02G01930.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 3'ss of exon 12
-------------accaatcatttatatttttactagggataagttagacaacaccttc-tatgtgcct--tacaattggagtttgact-ctaagccacaaccttattctgtttcagGGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG
               |  ||   ||||||||||  |  |  ||   |||  | |  |||   ||  | |  |||| || |  ||    |  | | ||   | ||| |||| |||||||| ||||||||||| || |||||||||||| | || ||||| ||||| |||
gtaaaatcctgatctctttcccatatatttttatgacagtaaaa--agatgatattttcacttgcacttgctacatttaggattcatttattcatcctttagctttttctatttcagGGAAAGGTTAACCCTACTCAGTGTGAGGCTCTCACAATGGTCTGTGCTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51344356|gb|CO985089.1|CO985089
EST:     TTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCT                         GGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG
genomic: TTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCTgtaagatcct ... tctgtttcagGGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG
EST: gi|26047345|gb|CA784166.1|CA784166
EST:     TTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCT                         GGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG
genomic: TTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCTgtaagatcct ... tctgtttcagGGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG
EST: gi|192307576|gb|FG999615.1|FG999615
EST:     TTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCT                         GGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG
genomic: TTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCTgtaagatcct ... tctgtttcagGGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG
EST: gi|51336381|gb|CO980247.1|CO980247
EST:     TTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCT                         GGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG
genomic: TTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCTgtaagatcct ... tctgtttcagGGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG
EST: gi|151394627|gb|EV264498.1|EV264498
EST:     TTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCT                         GGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG
genomic: TTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCTgtaagatcct ... tctgtttcagGGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG
EST: gi|51343889|gb|CO984622.1|CO984622
EST:     TTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCT                         GGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG
genomic: TTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCTgtaagatcct ... tctgtttcagGGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgtgccttacaattggagtttgactctaagccacaaccttattctgtttcagGGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAG
                                       ccttattctgtttc  CT-rich tract
         ttacaatt  TA-rich tract