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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcagtcttttatttgcattgcagtgtttagtttggtcttgatgtatcatataaattttttatgtgaaataagagaaaatctatttttggcctttccagcagTAGGGGGATCTTTCCAGGAAGTAAATAATAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG

Basic information

species Glycine max
transcript GLYMA01G37380.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18730265|gb|BM525779.1|BM525779
EST:     TGATTTCAATTCTTACATTAAGTGTAACTTTGTTATCCATGGCTCAGATT                         TAGGGGGATCTTTCCAGGAAGTAAATAATAGCAAACAGAGGGTTATTACAC
genomic: TGATTTCAATTCTTACATTAAGTGTAACTTTGTTATCCATGGCTCAGATTgtaagcagtc ... tttccagcagTAGGGGGATCTTTCCAGGAAGTAAATAATAGCAAACAGAGGGTTATTACAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catataaattttttatgtgaaataagagaaaatctatttttggcctttccagcagTAGGGGGATCTTTCCAGGAAGTAAATAATAGCAAACAGAGGGTTATTACACCTAGCACCAAATGGGAACAAGTTAAG
                                    tttttggcctttcc  CT-rich tract
     aaattttttatgtgaa  TA-rich tract