1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttaactttgtcaactggccattttctcattgcattatttgttattactgcactaaactcttattttaatcttcatcctttctggttaacttttagGACGAAAGAGAGCTTAAAAGACAAAGACGGAAACAGTCTAATCGGGAGTCTGCACGCAGATCCAGGTTACGGAAGCAG
species | Glycine max |
transcript | GLYMA16G15810.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGATTGCTGCTGGATCACGAGATGGCGTTCAGCCACAAGTTTGGCCGCAG GACGAAAGAGAGCTTAAAAGACAAAGACGGAAACAGTCTAATCGGGAGTCTEST: gi|192312736|gb|FK005390.1|FK005390
genomic: TGATTGCTGCTGGATCACGAGATGGCGTTCAGCCACAAGTTTGGCTGCAGgttaactttg ... taacttttagGACGAAAGAGAGCTTAAAAGACAAAGACGGAAACAGTCTAATCGGGAGTCT
EST: TGATTGCTGCTGGATCACGAGATGGCGTTCAGCCACAAGTTTGGCCGCAG GACGAAAGAGAGCTTAAAAGACAAAGACGGAAACAGTCTAATCGGGAGTCTEST: gi|27427472|gb|CA938992.1|CA938992
genomic: TGATTGCTGCTGGATCACGAGATGGCGTTCAGCCACAAGTTTGGCTGCAGgttaactttg ... taacttttagGACGAAAGAGAGCTTAAAAGACAAAGACGGAAACAGTCTAATCGGGAGTCT
EST: TGATTGCTGCTGGATCACGAGATGGCGTTCAGCCACAAGTTTGGCTGCAG GACGAAAGAGAGCTTAAAAGACAAAGACGGAAACAGTCTAATCGGGAGTCT
genomic: TGATTGCTGCTGGATCACGAGATGGCGTTCAGCCACAAGTTTGGCTGCAGgttaactttg ... taacttttagGACGAAAGAGAGCTTAAAAGACAAAGACGGAAACAGTCTAATCGGGAGTCT
ttattactgcactaaactcttattttaatcttcatcctttctggttaacttttagGACGAAAGAGAGCTTAAAAGACAAAGACGGAAACAGTCTAATCGGGAGTCTGCACGCAGATCCAGGTTACGGAAGCAG
ctttt CT-rich tract
taaactcttattttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaactttgtcaactggccattttctcattgcattatttgttattactgcactaaactcttattttaatcttcatcctttctggttaacttttagGACGAAAGAGAGCTTAAAAGACAAAGACGGAAACAGTCTAATCGGGAGTCTGCACGCAGATCCAGGTTACGGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT