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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgcacatccttatagtaaatctataagcaattatagactagaatattcagcttcataaagttatttctgaatactgtatgcttggttatcataaccctgagaaagatctttttgctgatttcattgtatcatcatgtgtacttgactttcatggctttggtctcaagtaatcagtgcatatgggttacagATTGTTGTAGTGGTTGGCTGGAAGGCCCTAATAAGGTGTATATCCCATTTCTAGCTTGTGGTGACCTCAGTGGGTATGATTCTGATCGCTCATATCCACT

Basic information

species Glycine max
transcript GLYMA15G07970.3
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G07970.2 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os06g49140.1 (Oryza sativa), 3'ss of exon 10
gtatatgcacatccttatagtaaatctataagcaattatagactagaatattcagcttcataaagttatttctgaatactgtatgcttggttatcataaccctgagaaagatctttttgctgatttcattgtatcatcatgtgtacttgactttcatggctttggtctcaagtaatcagtgcatatgggttacagATTGTTGTAGTGGTTGGCTGGAAGGCCCTAATAAGGTGTATATCCCATTTCTAGCTTGTGGTGACCTCAGTGGGTATGATTCTGATCGCTCATATCCACT
                                                                                                |||     | |||  ||    |||   ||      |  || |      || |||  | || |      | ||||   |||     ||| ||     |||| ||  | ||||| ||| | || || || || ||||| || ||||||||||| ||||| |||||||||||||| || ||||| ||||| || || |||||
-----------------------------------------------------------------------------------------------gtaatggc-acaaaactcaaaatgccatttgtgaaatgccaaccca-acacatga--tacaggat----gcctcattcaattttgtcatgtg-----cagACTGCAGAAGTGGATGGTTAGAGGGACCAAACAAGGTCTACATCCCATTTCTGGCTTGCGGTGACCTCAGTGGTTACGATTCGGATCGTTCTTACCCACT

upper sequence: GLYMA15G07970.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv08s0007g01960.t01 (Vitis vinifera), 3'ss of exon 10
gtatatgcacatccttatagtaaatctataagcaattatagactagaatattcagcttcataaagttatttctgaatactgtatgcttggttatcataaccctgagaaagatctttttgctgatttcattgtatcatcatgtgtacttgactttcatggctttggtctcaagtaatcagtgcatatgggttacagATTGTTGTAGTGGTTGGCTGGAAGGCCCTAATAAGGTGTATATCCCATTTCTAGCTTGTGGTGACCTCAGTGGGTATGATTCTGATCGCTCATATCCACT
                                                                                  | ||   ||| | | | |  |||    |    || |   ||  |  |||  | ||       |  |||   | |||  |||     | | || |   |||||       ||||||||  | || || ||| ||||||| || ||||||||||| || |||||| | |||||||| ||||||||||||||||| || || |  |||||||| ||
---------------------------------------------------------------------------------caggccaagtt-ttacatctttgattgggcctgttcttaggagattcttgcttaat-------agatgatagtgatgtttttccctcctaatatttgttgcatg------acagATTGCAGAAGCGGGTGGTTGGAAGGGCCAAATAAGGTGTACATTCCATTTTTGGCTTGTGGAGACCTCAGTGGGTATGACTCAGACCAGTCATATCCTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193550560|gb|FK508871.1|FK508871
EST:     TCATCGCCTTCTTGAGAAGGTTGGAAGTCCCTCAGGGGTAGATGATACAG                         ATTGTTGTAGTGGTTGGCTGGAAGGCCCTAATAAGGTGTATATCCCATTTC
genomic: TCATCGCCTTCTTGAGAAGGTTGGAAGTCCCTCAGGGGTAGATGATACAGgtatatgcac ... tgggttacagATTGTTGTAGTGGTTGGCTGGAAGGCCCTAATAAGGTGTATATCCCATTTC
EST: gi|7640100|gb|AW734408.1|AW734408
EST:     TGAGAAGGTTGGAAGTCCCTCAGGGGTAGATGATACAG                         ATTGTTGTAGTGGTTGGCTGGAAGGCCCTAATAAGGTGTATATCCCATTTC
genomic: TGAGAAGGTTGGAAGTCCCTCAGGGGTAGATGATACAGgtatatgcac ... tgggttacagATTGTTGTAGTGGTTGGCTGGAAGGCCCTAATAAGGTGTATATCCCATTTC
EST: gi|151397919|gb|EV267792.1|EV267792
EST:     TCATCGCCTTCTTGAGAAGGTTGGAAGTCCCTCAGGGGTAGATGATACAG                         ATTGTTGTAGTGGTTGGCTGGAAGGCCCTAATAAGGTGTATATCCCATTTC
genomic: TCATCGCCTTCTTGAGAAGGTTGGAAGTCCCTCAGGGGTAGATGATACAGgtatatgcac ... tgggttacagATTGTTGTAGTGGTTGGCTGGAAGGCCCTAATAAGGTGTATATCCCATTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtacttgactttcatggctttggtctcaagtaatcagtgcatatgggttacagATTGTTGTAGTGGTTGGCTGGAAGGCCCTAATAAGGTGTATATCCCATTTCTAGCTTGTGGTGACCTCAGTGGGTATGATTCTGATCGCTCATATCCACT
    acttgac  putative branch site (score: 4)
                             aagtaat  TA-rich tract