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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagcaataccttgttcattctggaatctggatgaagtgctgacacaagatctgcagtaacattttctagggcttacatcatgttttcattatgacttgcttgcagATTGAGGCAGCACTATCATCGTGTGATCATGTGGATAATATAATGGTTTATGCAGACCCCTTTCACAATTACTGTGTGGCTCTAGTTGTTGCTTCGCATC

Basic information

species Glycine max
transcript GLYMA13G11700.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G11700.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv12s0057g01270.t01 (Vitis vinifera), 3'ss of exon 10
----gtaaagcaataccttgttcattctggaatctggatgaag--tgctgacacaagatct-gcagtaacattttctagggcttacatcatgttttcattatgacttgcttgcagATTGAGGCAGCACTATCATCGTGTGATCATGTGGATAATATAATGGTTTATGCAGACCCCTTTCACAATTACTGTGTGGCTCTAGTTGTTGCTTCGCATC
    |||  | | |    |  |  |||| || |  ||||      |     || |||   | || ||||   ||| | |   | ||    | | ||  |     |||   ||||| |||||||||||||        || |  ||||||||||||||||||| || ||||| ||||| |||||||| ||||| ||||| || ||  |||| ||||
gtttgtactggatttgactagtacttcttgattgaggataccccttctcatcagaagggatagctgtaatcgtttttggaagtcactctttatgtttgtccatgctt---tgcagGTTGAGGCAGCACTGATGGGAAGTAACTATGTGGATAATATAATGGTATACGCAGATCCCTTGCACAATTATTGTGTAGCTCTGGTGGTCCCTTCACATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11274197|gb|BF324565.1|BF324565
EST:     AGAAAGATATTGTCAAACTTCAACATGGAGAATATATATCTCTTGGAAAG                         ATTGAGGCAGCACTATCATCGTGTGATCATGTGGATAATATAATGGTTTAT
genomic: AGAAAGATATTGTCAAACTTCAACATGGAGAATATATATCTCTTGGAAAGgtaaagcaat ... ttgcttgcagATTGAGGCAGCACTATCATCGTGTGATCATGTGGATAATATAATGGTTTAT
EST: gi|7693228|gb|AW761324.1|AW761324
EST:     AGAAAGATATTGTCAAACTTCAACATGGAGAATATATATCTCTTGGAAAG                         ATTGAGGCAGCACTATCATCGTGTGATCATGTGGATAATATAATGGTTTAT
genomic: AGAAAGATATTGTCAAACTTCAACATGGAGAATATATATCTCTTGGAAAGgtaaagcaat ... ttgcttgcagATTGAGGCAGCACTATCATCGTGTGATCATGTGGATAATATAATGGTTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcagtaacattttctagggcttacatcatgttttcattatgacttgcttgcagATTGAGGCAGCACTATCATCGTGTGATCATGTGGATAATATAATGGTTTATGCAGACCCCTTTCACAATTACTGTGTGGCTCTAGTTGTTGCTTCGCATC
                                            cttgctt  CT-rich tract
                                ttttcattat  TA-rich tract