1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttaaaaatatgtttcatgttaccatttgtatgcacaattgattcaggcaagtttttatgtctagttgaaaaaatttattccagaattccaatttatgcagACGATGAAGAAAACTCGACACCCGCGTTGGAATGAAGAATTCCAATTCATGCTAGAGGAGCCTCCTCTACATGAGAAGATACATATTGAGGTTATGAGCA
species | Glycine max |
transcript | GLYMA10G35410.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACAACCCATTTGCAGTGCTGACCTTTAGAGGCGAAAAGAAAAGGACAAAG ACGATGAAGAAAACTCGACACCCGCGTTGGAATGAAGAATTCCAATTCATGEST: gi|51335808|gb|CO979674.1|CO979674
genomic: ACAACCCATTTGCAGTGCTGACCTTTAGAGGCGAAAAGAAAAGGACAAAGgtaaactttc ... atttatgcagACGATGAAGAAAACTCGACACCCGCGTTGGAATGAAGAATTCCAATTCATG
EST: ACAACCCATTTGCAGTGCTGACCTTTAGAGGCGAAAAGAAAAGGACAAAG ACGATGAAGAAAACTCGACACCCGCGTTGGAATGAAGAATTCCAATTCATG
genomic: ACAACCCATTTGCAGTGCTGACCTTTAGAGGCGAAAAGAAAAGGACAAAGgtaaactttc ... atttatgcagACGATGAAGAAAACTCGACACCCGCGTTGGAATGAAGAATTCCAATTCATG
ggcaagtttttatgtctagttgaaaaaatttattccagaattccaatttatgcagACGATGAAGAAAACTCGACACCCGCGTTGGAATGAAGAATTCCAATTCATGCTAGAGGAGCCTCCTCTACATGAGAAGATACATATTGAGGTTATGAGCA
tttttatgtctagttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaaaatatgtttcatgttaccatttgtatgcacaattgattcaggcaagtttttatgtctagttgaaaaaatttattccagaattccaatttatgcagACGATGAAGAAAACTCGACACCCGCGTTGGAATGAAGAATTCCAATTCATGCTAGAGGAGCCTCCTCTACATGAGAAGATACATATTGAGGTTATGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- aaaaata
- - - - - - - - tgttacc
- - - - - - - - - - - - - -gtatgca
- - - - - - - - - - - - - - - - - - - - - tcaggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaa