Sequence
atgc intronic sequence ATGC exonic sequencegtaggcctatattacctgattacttcctatgaaactgatatgctatatgtaatattaaatccatatacttgctatgatatatagCCTGCCCATGAGAAGATTGGAGTTGTTGATACTCAGTGGATTGTGCACCAAGGTATTCCCTCACTAGGGAATCAG
Basic information
species | Glycine max |
transcript | GLYMA08G14050.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G14050.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 7
--gtaggcctatattacctgattact-----tcctatgaaactgatatgcta-tatgtaatattaaatccata-tacttgctatgatatatagCCTGCCCATGAGAAGATTGGAGTTGTTGATACTCAGTGGATTGTGCACCAAGGTATTCCCTCACTAGGGAATCAG
| ||||| | | | | || || ||| | | | || || ||| | || | || | | | | | | | | |||||||||||||||| ||||||||||| ||| |||| ||||| | || ||| | ||||||| || ||||| |||
gtactgacctatgtctgcctacttctaattctcttatatcatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAATGGATCATTCATCAAACTTTTCCCTCGCTTGGGAACCAG
upper sequence: GLYMA08G14050.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv13s0106g00570.t01 (Vitis vinifera), 3'ss of exon 3
--gtaggcctatattacctgattact-----tcctatgaaactgatatgcta-tatgtaatattaaatccata--tacttgctatgatatatagCCTGCCCATGAGAAGATTGGAGTTGTTGATACTCAGTGGATTGTGCACCAAGGTATTCCCTCACTAGGGAATCAG
| ||||| | | | | || || ||| | | | || || ||| | || | || | | || | | | | |||||||||||||||| ||||||||||| ||| |||| |||| || || ||| | ||||||| || ||||| |||
gtactgacctatgtctgcctacttctaattctcttatattatttgtttgttagcatgcatgatcatattggaacttgctcgtctttgaa-acagCCTGCCCATGAGAAAATTGGAGTTGTAGATTCTCAAGGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaaactgatatgctatatgtaatattaaatccatatacttgctatgatatatagCCTGCCCATGAGAAGATTGGAGTTGTTGATACTCAGTGGATTGTGCACCAAGGTATTCCCTCACTAGGGAATCAG
aactgat putative branch site (score: 3)
tatatgtaatattaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggcctatattacctgattacttcctatgaaactgatatgctatatgtaatattaaatccatatacttgctatgatatatagCCTGCCCATGAGAAGATTGGAGTTGTTGATACTCAGTGGATTGTGCACCAAGGTATTCCCTCACTAGGGAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA