1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcaaggataagcacttaagaaaggtgtttgtatgtcttctactttgtagaaagtgtctctcccactaatcctcttactggttttcccattcttgctgcagGTGGTGGAAATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCTTCCACCTAAGCGTGGTATCACACAATATCACCCAATTCGCTGAAAAGGGG
species | Glycine max |
transcript | GLYMA07G28990.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTG GTGGTGGAAATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCTTEST: gi|209712880|gb|BW679157.1|BW679157
genomic: CGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTGgtaaggtgtt ... cttgctgcagGTGGTGGAAATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: CGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTG GTGGTGGAAATGTTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCTTEST: gi|193385954|gb|FK351582.1|FK351582
genomic: CGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTGgtaaggtgtt ... cttgctgcagGTGGTGGAAATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: CGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTG GTGGTGGAAATATTGCCTTCTT-TTTGGTCCTTTTCATTTTGAGGAAGCTTEST: gi|19936698|gb|BQ080978.1|BQ080978
genomic: CGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTGgtaaggtgtt ... cttgctgcagGTGGTGGAAATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCTT
EST: CGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTG GTGGTGGAAATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCTT
genomic: CGGACCTTGATGTCTTGGATCATCCTATTCTAAACTTCATATATTACCTGgtaaggtgtt ... cttgctgcagGTGGTGGAAATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCTT
gtagaaagtgtctctcccactaatcctcttactggttttcccattcttgctgcagGTGGTGGAAATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCTTCCACCTAAGCGTGGTATCACACAATATCACCCAATTCGCTGAAAAGGGG
ttttcccattcttgct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaggataagcacttaagaaaggtgtttgtatgtcttctactttgtagaaagtgtctctcccactaatcctcttactggttttcccattcttgctgcagGTGGTGGAAATATTGCCTTCTTCTTTGGTCCTTTTCATTTTGAGGAAGCTTCCACCTAAGCGTGGTATCACACAATATCACCCAATTCGCTGAAAAGGGG
- - - - - - - - - - - - - - tgtatgt
- - - - - - - - - - - - - - - - - -cttctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttccca