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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtatattaaaaagcttgtgtttaatgaaaattgatccttgggaaatttgctatgattaaatttctgttttgtgtgcatgtacagAGAGATCAGATATTAGATCTCAGTTCAATTCAGTGCTCTATCAGCTTCTATTGGATCCTAGTGAAAGAGTCTGCTTTGAGGCAATTTTGTGCGTACTAGG

Basic information

species Glycine max
transcript GLYMA05G36530.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36530.1 (Glycine max), 3'ss of exon 10
lower sequence: AT2G07360.2 (Arabidopsis thaliana), 3'ss of exon 11
-------------------------------------gttggtatattaaaaagcttgtgt--ttaatgaaaattgatccttgggaaatttgctatgattaaatttctgttttgtgtgcatgtacagAGAGATCAGATATTAGATCTCAGTTCAATTCAGTGCTCTATCAGCTTCTATTGGATCCTAGTGAAAGAGTCTGCTTTGAGGCAATTTTGTGCGTACTAGG
                                      |  || | ||      ||| | |   ||      |  |||| || |  || || | ||| |   | ||   |||    |     |||||||||  | |||||||| ||||||||||| ||| | ||||||||||| ||  | ||||| || ||||| || |||| |||||| ||||||||| | || ||
gtaagtactatcaacctctttctgctgcccgttctcgctctgtttttttttcttcttatctggctatatgggagagatcttttgagaacttac-atgttgctagtttcctttca-atcttcctacagAGAGGCCTGATATTAGGTCTCAGTTCAACTCAATTCTCTATCAGCTACTCCTAGATCCAAGCGAAAGGGTATGCTATGAGGCGATTTTGTGCATTCTGGG

upper sequence: GLYMA05G36530.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 11
------------------gttggtatattaaaaagcttgtgtttaatgaaaattgatccttgggaaatttgct--atgattaa-atttctgttttgtgtgcatgtacagAGAGATCAGATATTAGATCTCAGTTCAATTCAGTGCTCTATCAGCTTCTATTGGATCCTAGTGAAAGAGTCTGCTTTGAGGCAATTTTGTGCGTACTAGG
                   ||  ||| ||   ||  ||     |  | |   || || | |  |||||||     ||| ||   || |  || |||| ||  || ||||| ||| | || ||||||||||||||||| || ||||||||||| |||||  | |||||||||||||||||||| ||||||||||| || || ||| | ||
gtgagtgcgtttgattttatttatattttttgaaattttaaaatttttat--ttcattcctttgaaatttataggatggttggtatcttggtattgt-tgtgtggacagAAAGACCTGACATTAGATCTCAGTTCAACTCGGTGCTCTATCAACTTCTCCTTGATCCTAGTGAAAGAGTCTGTTTTGAGGCAATCTTATGTGTATTGGG

upper sequence: GLYMA05G36530.1 (Glycine max), 3'ss of exon 10
lower sequence: EFJ38257 (Selaginella moellendorffii), 3'ss of exon 6
gttggtatattaaaaagcttgtgtttaatgaaaattgatccttgggaaatttgctatgattaaatttctgttttgtgtgcatgtacagAGAGATCAGATATTAGATCTCAGTTCAATTCAGTGCTCTATCAGCTTCTATTGGATCCTAGTGAAAGAGTCTGCTTTGAGGCAATTTTGTGCGTACTAGG
                            |     ||     ||   |  |||| | |     || | |  || |||     | ||||||   | | ||| | ||||||||||||| | |  |  | || ||||||||  ||||||||||||||||||| |||||||| |||||    ||| |  | ||
---------------------------gtttgggtttccttttattatctttgtttt--ccgaactcccattgtgttcttttctacagAAGTACCGGATCTCAGATCTCAGTTCACTACTATATTATACCAGCTTCTTCTGGATCCTAGTGAAAGAGTTTGCTTTGAAGCAATCAGCTGCATTTTGGG

upper sequence: GLYMA05G36530.1 (Glycine max), 3'ss of exon 10
lower sequence: EFJ14965 (Selaginella moellendorffii), 3'ss of exon 6
gttggtatattaaaaagcttgtgtttaatgaaaattgatccttgggaaatttgctatgattaaatttctgttttgtgtgcatgtacagAGAGATCAGATATTAGATCTCAGTTCAATTCAGTGCTCTATCAGCTTCTATTGGATCCTAGTGAAAGAGTCTGCTTTGAGGCAATTTTGTGCGTACTAGG
                            |   | ||     ||   |  |||| | |     || | |  || |||     | ||||||   | | ||| | ||||| ||||||| | |  |  | || ||||||||  ||||||||||||||||||| |||||||| |||||    ||| |  | ||
---------------------------gtttgagtttccttttattatctttgtttt--ccgaactcccattgtgttcttttctacagAAGTACCGGATCTCAGATCGCAGTTCACTACTATATTATACCAGCTTCTTCTGGATCCTAGTGAAAGAGTTTGCTTTGAAGCAATCAGCTGCATTTTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgatccttgggaaatttgctatgattaaatttctgttttgtgtgcatgtacagAGAGATCAGATATTAGATCTCAGTTCAATTCAGTGCTCTATCAGCTTCTATTGGATCCTAGTGAAAGAGTCTGCTTTGAGGCAATTTTGTGCGTACTAGG
 aattgat  putative branch site (score: 4)
             aaatttgctatgatta  TA-rich tract