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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatgttcccactgctatcaaacaaattaaaggaatgcgaagagaaaatggtagagctaaagttgctgttactttttcatttgataataagatatatttgttaatttgaatagacatttacagttaatctaatactttttatatgtaataaaatccatcaatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCGCTGATTTTGGATAATAGAATTCAAGGGCATATTGATCAAGTGAACCGGCTCTTAG

Basic information

species Glycine max
transcript GLYMA05G14170.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G14170.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv08s0040g00430.t01 (Vitis vinifera), 3'ss of exon 10
gtaattatgttcccactgctatcaaacaaattaaaggaatgcgaagagaaaatggtagagctaaagttgctgttactttttcatttgataataagatatatttgttaatttgaatagacatttacagttaatctaatactttttatatgtaataaaatccatcaatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCGCTGATTTTGGATAATAGAATTCAAGGGCATATTGATCAAGTGAACCGGCTCTTAG
                                                             ||   ||  | ||||| |||  |||   | |    || ||||     ||| | |     |  | |      | | |    ||| ||| || | || | |||     | ||||| || ||||| || ||| | |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||  | ||||
-------------------------------------------------------------tattcttatttttactattttttttttcattt--ttaaattt-----tttaagtttgtgtccaaaacctgccaagt---ctttgtatttactcaa-ttcattgccattcagGAGCTGAATGTGCCAGAGGAAGATGTTGAGCAGCTGTTGGTGTCGCTGATTTTGGATAACCGAATTCAAGGGCATATTGATCAAGTGAACCGATTATTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020463|gb|CX707205.1|CX707205
EST:     TGAAGCTCATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAG                         GAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCGCTGATT
genomic: TGAAGCTCATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAGgtaattatgt ... caatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCGCTGATT
EST: gi|8404263|gb|BE059897.1|BE059897
EST:     TGAAGCTCATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAG                         GAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCGCTGATT
genomic: TGAAGCTCATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAGgtaattatgt ... caatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCGCTGATT
EST: gi|254329996|gb|GR839549.1|GR839549
EST:     TGAAGCTCATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAG                         GAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCGCTGATT
genomic: TGAAGCTCATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAGgtaattatgt ... caatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCGCTGATT
EST: gi|254329997|gb|GR839550.1|GR839550
EST:     TGAAGCTCATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAG                         GAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCGCTGATT
genomic: TGAAGCTCATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAGgtaattatgt ... caatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCGCTGATT
EST: gi|9899182|gb|BE608080.1|BE608080
EST:     TGAAGCTCATCANACCATATACAAGGATCANGATCCCTTTTATATCTAAG                         GAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATGGGTGTCGCTGATT
genomic: TGAAGCTCATCAAACCATATACAAGGATCAGGATCCCTTTTATATCTAAGgtaattatgt ... caatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCGCTGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatttacagttaatctaatactttttatatgtaataaaatccatcaatttgcagGAACTTAATGTTCCTGAGCATGATGTTGAGCAGCTATTGGTGTCGCTGATTTTGGATAATAGAATTCAAGGGCATATTGATCAAGTGAACCGGCTCTTAG
             atctaat  putative branch site (score: 3)
     tacagttaatctaata  TA-rich tract