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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttattataattagtgatccattatgatgactttaactgtgcaaggcaatctataatgacacccagatcatttacatattaaatttgtgtctacatacagGTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAGCAGTTCTTGTGAGAGTGACAAATTTATCATTTAGCAAATTGTGATGTTC

Basic information

species Glycine max
transcript GLYMA05G03730.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31462360|gb|CD404388.1|CD404388
EST:     CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAG                         GTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
genomic: CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAGgtacattcct ... ctacatacagGTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
EST: gi|7691559|gb|AW759684.1|AW759684
EST:     CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAG                         GTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
genomic: CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAGgtacattcct ... ctacatacagGTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
EST: gi|22524501|gb|BU083312.1|BU083312
EST:     CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAG                         GTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
genomic: CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAGgtacattcct ... ctacatacagGTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
EST: gi|13787698|gb|BG650290.1|BG650290
EST:     CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAG                         GTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
genomic: CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAGgtacattcct ... ctacatacagGTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
EST: gi|120496159|gb|EH224326.1|EH224326
EST:     AACTACAAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAG                         GTATGCCTGAAAATCAT
genomic: AACTACAA-GATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAGgtacattcct ... ctacatacagGTATGCCTGAAAATCAT
EST: gi|13482176|gb|BG511519.1|BG511519
EST:     CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAG                         GTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
genomic: CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAGgtacattcct ... ctacatacagGTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
EST: gi|7283858|gb|AW596460.1|AW596460
EST:     CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAG                         GTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
genomic: CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAGgtacattcct ... ctacatacagGTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
EST: gi|209729478|gb|BW655108.1|BW655108
EST:     CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAG                         GTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
genomic: CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAGgtacattcct ... ctacatacagGTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
EST: gi|10254275|gb|BE822041.1|BE822041
EST:     CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAG                         GTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
genomic: CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAGgtacattcct ... ctacatacagGTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
EST: gi|22928589|gb|BU545728.1|BU545728
EST:     CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAG                         GTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
genomic: CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAGgtacattcct ... ctacatacagGTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
EST: gi|209698687|gb|BW656512.1|BW656512
EST:     CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAG                         GTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
genomic: CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAGgtacattcct ... ctacatacagGTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
EST: gi|120497248|gb|EH225415.1|EH225415
EST:     CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAG                         GTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
genomic: CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAGgtacattcct ... ctacatacagGTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
EST: gi|209729084|gb|BW655074.1|BW655074
EST:     CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAG                         GTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
genomic: CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAGgtacattcct ... ctacatacagGTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
EST: gi|17402207|gb|BM178989.1|BM178989
EST:     CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAATGCCTGAGTTGAG                         GTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG
genomic: CAACTACAAGATTGATTACGTTACCGGAAGGAAGTAACGCCTGAGTTGAGgtacattcct ... ctacatacagGTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaatctataatgacacccagatcatttacatattaaatttgtgtctacatacagGTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAGCAGTTCTTGTGAGAGTGACAAATTTATCATTTAGCAAATTGTGATGTTC
                   agatcatttacatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttattataattagtgatccattatgatgactttaactgtgcaaggcaatctataatgacacccagatcatttacatattaaatttgtgtctacatacagGTATGCCTGAAAATCATATTTATTGTTCCAGCAATGGGAGATCATTAATAGCAGTTCTTGTGAGAGTGACAAATTTATCATTTAGCAAATTGTGATGTTC

- - - - - - - - - - - - tgatgac
- - - - - - - - - - - - - - - - - - - -tgcaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtgt