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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcttaaatgcattataaaattattttattctgatattgatttgtttatttctgtttttaatttggccagtctattttcatattcctgtatggcctttttggtctcatttttaacaatagaaattgatgtaattttgtagcaactgttgatctctttgctgtacgatcctgatgcataatttctttgtaacagGGTTACAGGAATTCTTCCGCCTCTGAGAC

Basic information

species Glycine max
transcript GLYMA02G10880.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820645|gb|BE556155.1|BE556155
EST:     GCTTGTCTGGACAAAGACAAGGACAGCCAGTATTTATCACCAAACTTGAA                         GGTTACAGGAATTCTTCCGCCTCTGAGAC
genomic: GCTTGTCTGGACAAAGACAAGGACAGCCAGTATTTATCACCAAACTTGAAgtatgttctt ... tttgtaacagGGTTACAGGAATTCTTCCGCCTCTGAGAC
EST: gi|6915619|gb|AW397149.1|AW397149
EST:     GCTTGTCTGGACAAAGACAAGGACAGCCAGTATTTATCACCAAACTTGAA                         GGTTACAGGAATTCTTCCGCCTCTGAGAC
genomic: GCTTGTCTGGACAAAGACAAGGACAGCCAGTATTTATCACCAAACTTGAAgtatgttctt ... tttgtaacagGGTTACAGGAATTCTTCCGCCTCTGAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcaactgttgatctctttgctgtacgatcctgatgcataatttctttgtaacagGGTTACAGGAATTCTTCCGCCTCTGAGAC
                            tcctgat  putative branch site (score: 3)
                                         tttctttgt  putative PPT
                                     ataatttctttgtaa  TA-rich tract