1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaggttgctagtaatatggcatcaactaactaattgctttttcttttttaatgttcaatagaaaattattcataatatttaatgagtttgcgtaatgctatcctattatagTGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCT
species | Glycine max |
transcript | GLYMA02G01930.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTTGTGGCTTCATTGATGAAGATTGCTAATGATATACGGTTATTGGGAAG TGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGEST: gi|51336381|gb|CO980247.1|CO980247
genomic: GTTGTGGCTTCATTGATGAAGATTGCTAATGATATACGGTTATTGGGAAGgtaggttgct ... cctattatagTGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGG
EST: GTTGTGGCTTCATTGATGAAGATTGCTAATGATATACGGTTATTGGGAAG TGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGEST: gi|192307576|gb|FG999615.1|FG999615
genomic: GTTGTGGCTTCATTGATGAAGATTGCTAATGATATACGGTTATTGGGAAGgtaggttgct ... cctattatagTGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGG
EST: GTTGTGGCTTCATTGATGAAGATTGCTAATGATATACGGTTATTGGGAAG TGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGEST: gi|151394627|gb|EV264498.1|EV264498
genomic: GTTGTGGCTTCATTGATGAAGATTGCTAATGATATACGGTTATTGGGAAGgtaggttgct ... cctattatagTGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGG
EST: GTTGTGGCTTCATTGATGAAGATTGCTAATGATATACGGTTATTGGGAAG TGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGEST: gi|26047345|gb|CA784166.1|CA784166
genomic: GTTGTGGCTTCATTGATGAAGATTGCTAATGATATACGGTTATTGGGAAGgtaggttgct ... cctattatagTGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGG
EST: GTTGTGGCTTCATTGATGAAGATTGCTAATGATATACGGTTATTGGGAAG TGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGEST: gi|51344356|gb|CO985089.1|CO985089
genomic: GTTGTGGCTTCATTGATGAAGATTGCTAATGATATACGGTTATTGGGAAGgtaggttgct ... cctattatagTGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGG
EST: GTTGTGGCTTCATTGATGAAGATTGCTAATGATATACGGTTATTGGGAAG TGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGG
genomic: GTTGTGGCTTCATTGATGAAGATTGCTAATGATATACGGTTATTGGGAAGgtaggttgct ... cctattatagTGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGG
aatagaaaattattcataatatttaatgagtttgcgtaatgctatcctattatagTGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCT
atttaat putative branch site (score: 4)
ctatcct putative PPT
aaaattattcataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttgctagtaatatggcatcaactaactaattgctttttcttttttaatgttcaatagaaaattattcataatatttaatgagtttgcgtaatgctatcctattatagTGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA