Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acatatatgcctagatggactaatatgactgttataactaaataacctgcttgatatctgaagatttgtgggaagactgaccacactgtctgttctacagGAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGGAATGATCAGCATGTGGGTAATGACACTCAACAGAGTGGGCAGACAGAGG

Basic information

species Glycine max
transcript GLYMA01G01740.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22932747|gb|BU549886.1|BU549886
EST:     TGATTATGAGCAGCTAGTCTCNNNGAATTCAGCTCTCAAG                         GAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGG
genomic: TGATTATGAGCAGCTAGTCTCCGAGAATTCAGCTCTCAAGgtaatgttag ... tgttctacagGAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGG
EST: gi|193482301|gb|FK445734.1|FK445734
EST:     GAATCAGGAGTGATTATGAGCAGCTAGTCTCCGAGAATTCAGCTCTCAAG                         GAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGG
genomic: GAATCAGGAGTGATTATGAGCAGCTAGTCTCCGAGAATTCAGCTCTCAAGgtaatgttag ... tgttctacagGAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGG
EST: gi|17021333|gb|BM092367.1|BM092367
EST:     GAATCAGGAGTGATTATGAGCAGCTAGTCTCCGAGAATTCAGCTCTCAAG                         GAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGG
genomic: GAATCAGGAGTGATTATGAGCAGCTAGTCTCCGAGAATTCAGCTCTCAAGgtaatgttag ... tgttctacagGAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgcttgatatctgaagatttgtgggaagactgaccacactgtctgttctacagGAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGGAATGATCAGCATGTGGGTAATGACACTCAACAGAGTGGGCAGACAGAGG
                             gactgac  putative branch site (score: 2)
                                           tctgttct  putative PPT
     ttgatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acatatatgcctagatggactaatatgactgttataactaaataacctgcttgatatctgaagatttgtgggaagactgaccacactgtctgttctacagGAGAGACTGGGGGAACTACCTGCGAATGATGATCATCACAGGTCTTGCAGGAATGATCAGCATGTGGGTAATGACACTCAACAGAGTGGGCAGACAGAGG

- - -tatgcct
- - - - - - - - - - - - atgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacact