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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctcgttgccaacatttctccattcattctcgaaatgtagtgtgtgtgccattgtgtttgctttattcgattcgtctgactgcttcgcttgtgttatgtttctcttgcagACAACTGTTTACTACTCCTGATGGCGGAACCGTTGCTTTGGACTGGCTCTTGAGTTCTGACG

Basic information

species Glycine max
transcript GLYMA20G31690.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208227400|gb|GE025047.1|GE025047
EST:     CCGTCTTTCTACAACTTCTTCGGCAGACCTCCCCTCTTCAAATACAGAAG                         ACAACTGTTTACTACTCCTGATGGCGGAACCGTTGCTTTGGACTGGCTCTT
genomic: CCGTCTTTCT-CAACTTCTTCGGCAGACCTCCCCTCTTCAAATACAGAAGgtcctcgttg ... tctcttgcagACAACTGTTTACTACTCCTGATGGCGGAACCGTTGCTTTGGACTGGCTCTT
EST: gi|27427271|gb|CA938791.1|CA938791
EST:     ACCGTCTTTCTCAACTTCTTCGGCAGACCTCCCCTCTTCAAATACAGAAG                         ACAACTGTTTACTACTCCTGATGGCGGAACCGTTGCTTTGGACTGGCTCTT
genomic: ACCGTCTTTCTCAACTTCTTCGGCAGACCTCCCCTCTTCAAATACAGAAGgtcctcgttg ... tctcttgcagACAACTGTTTACTACTCCTGATGGCGGAACCGTTGCTTTGGACTGGCTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgctttattcgattcgtctgactgcttcgcttgtgttatgtttctcttgcagACAACTGTTTACTACTCCTGATGGCGGAACCGTTGCTTTGGACTGGCTCTTGAGTTCTGACG
                  gtctgac  putative branch site (score: 3)
                                         tgtttctctt  putative PPT
                                      ttatgttt  TA-rich tract