1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtgttcattttttcatcaacctatccctatttttccctttcggtttattattcttgatattaattaggttaatgccgattattttctagGGTTTAACAAAGCTTTTGGCGGACAATGCCCCGAAGTCCATGAAGGAGAACAAATTCGAGAGCTACTTCGGTCGCAAGATCGCCATTGACGCTAGCATGA
species | Glycine max |
transcript | GLYMA20G22190.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTTTCTCTGCGAATTCCTATTCCCATACACAAACCAAATGGGTATTAAG GGTTTAACAAAGCTTTTGGCGGACAATGCCCCGAAGTCCATGAAGGAGAACEST: gi|208310656|gb|GE106016.1|GE106016
genomic: ATTTTCTCTGCGAATTCCTATTCCCATACACAAACCAAATGGGTATTAAGgtgttcattt ... tattttctagGGTTTAACAAAGCTTTTGGCGGACAATGCCCCGAAGTCCATGAAGGAGAAC
EST: ATTTTCTCTGCGAATTCCTATCCCCATACACAAACC-AATGGGTATTAAG GGTTTAACAAAGCTTTTGGCGGACAATGCCCCGAAGTCCATGAAGGAGAACEST: gi|208321861|gb|GE121230.1|GE121230
genomic: ATTTTCTCTGCGAATTCCTATTCCCATACACAAACCAAATGGGTATTAAGgtgttcattt ... tattttctagGGTTTAACAAAGCTTTTGGCGGACAATGCCCCGAAGTCCATGAAGGAGAAC
EST: ATTTTCTCTGCGAATTCCTATTCCCATACACAAACCAAATGGGTATTAAG GGTTTAACAAAGCTTTTGGCGGACAATGCCCCGAAGTCCATGAAGGAGAACEST: gi|207828262|gb|GD800029.1|GD800029
genomic: ATTTTCTCTGCGAATTCCTATTCCCATACACAAACCAAATGGGTATTAAGgtgttcattt ... tattttctagGGTTTAACAAAGCTTTTGGCGGACAATGCCCCGAAGTCCATGAAGGAGAAC
EST: ATTTTCTCTGCGAATTCCTATTCCCATACACAAACCAAATGGGTATTAAG GGTTTAACAAAGCTTTTGGCGGACAATGCCCCGAAGTCCATGAAGGAGAACEST: gi|192324168|gb|FK017899.1|FK017899
genomic: ATTTTCTCTGCGAATTCCTATTCCCATACACAAACCAAATGGGTATTAAGgtgttcattt ... tattttctagGGTTTAACAAAGCTTTTGGCGGACAATGCCCCGAAGTCCATGAAGGAGAAC
EST: ATTTTCTCTGCGAATTCCTATTCCCATACACAAACCAAATGGGTATTAAG GGTTTAACAAAGCTTTTGGCGGACAATGCCCCGAAGTCCATGAAGGAGAAC
genomic: ATTTTCTCTGCGAATTCCTATTCCCATACACAAACCAAATGGGTATTAAGgtgttcattt ... tattttctagGGTTTAACAAAGCTTTTGGCGGACAATGCCCCGAAGTCCATGAAGGAGAAC
ccctttcggtttattattcttgatattaattaggttaatgccgattattttctagGGTTTAACAAAGCTTTTGGCGGACAATGCCCCGAAGTCCATGAAGGAGAACAAATTCGAGAGCTACTTCGGTCGCAAGATCGCCATTGACGCTAGCATGA
ttattttct CT-rich tract
tttattattcttgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttcattttttcatcaacctatccctatttttccctttcggtttattattcttgatattaattaggttaatgccgattattttctagGGTTTAACAAAGCTTTTGGCGGACAATGCCCCGAAGTCCATGAAGGAGAACAAATTCGAGAGCTACTTCGGTCGCAAGATCGCCATTGACGCTAGCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA