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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcttcttccttttccgcatttcctttttcgctatctattgttctacatttcaattaattcccgaaacgtttgtgcagATGTGAAATCCATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCGAGGCTTTTCTCTTTTACAACAAATCGCACTTGATTTCCCTTCCAATGTC

Basic information

species Glycine max
transcript GLYMA19G42150.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298170466|gb|HO019090.1|HO019090
EST:     ATGGTTCCTCCTCAATTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCCATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAATTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttcttcttc ... gtttgtgcagATGTGAAATCCATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|19934424|gb|BQ079454.1|BQ079454
EST:     ATGGTTCCTCCTCAATTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCCATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAATTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttcttcttc ... gtttgtgcagATGTGAAATCCATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|9205376|gb|BE331600.1|BE331600
EST:     ATGGTTCCTCCTCAATTCTCCTCCCGGAGAAATCCAATACGTGGCCAAAG                         ATGTGAAATCCATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAATTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttcttcttc ... gtttgtgcagATGTGAAATCCATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|6502294|gb|AW203667.1|AW203667
EST:     ATGGTTCCTCCTCAATTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCCATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAATTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttcttcttc ... gtttgtgcagATGTGAAATCCATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|27424501|gb|CA936021.1|CA936021
EST:     ATGGTTCCTCCTCAATTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCCATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAATTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttcttcttc ... gtttgtgcagATGTGAAATCCATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|192295752|gb|FG992593.1|FG992593
EST:     ATGGTTCCTCCTCAATTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCCATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAATTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttcttcttc ... gtttgtgcagATGTGAAATCCATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
EST: gi|151412172|gb|EV281984.1|EV281984
EST:     ATGGTTCCTCCTCAATTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAG                         ATGTGAAATCCATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG
genomic: ATGGTTCCTCCTCAATTCTCCTCCCGGAGAAATCCAATACGTTGCCAAAGgttcttcttc ... gtttgtgcagATGTGAAATCCATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttcgctatctattgttctacatttcaattaattcccgaaacgtttgtgcagATGTGAAATCCATTCTCAACAACGACGATTTGTACAAGGAAGCCGCTTCCGAGGCTTTTCTCTTTTACAACAAATCGCACTTGATTTCCCTTCCAATGTC
                             aattaat  putative branch site (score: 3)
                     tacatttcaattaatt  TA-rich tract