1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttgatttctctattgctcatttcccgctattacgttgcgacgattgacgattctctatttttatttattcacttatttatttattattatggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAG
species | Glycine max |
transcript | GLYMA18G43000.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGEST: gi|6134179|gb|AW132572.1|AW132572
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGEST: gi|213602154|gb|DB962647.1|DB962647
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGEST: gi|26047871|gb|CA784524.1|CA784524
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGEST: gi|193683072|gb|FK621006.1|FK621006
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGEST: gi|151398007|gb|EV267885.1|EV267885
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGEST: gi|120495967|gb|EH224134.1|EH224134
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGEST: gi|9205154|gb|BE331378.1|BE331378
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGEST: gi|213601451|gb|DB968739.1|DB968739
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGEST: gi|20449496|gb|BQ253620.1|BQ253620
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGEST: gi|213620225|gb|DB965461.1|DB965461
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGEST: gi|193674641|gb|FK616879.1|FK616879
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC CTTGGATTTTTATATTGEST: gi|213618087|gb|DB963720.1|DB963720
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTG
EST: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGEST: gi|120495266|gb|EH223433.1|EH223433
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGEST: gi|209705809|gb|BW661477.1|BW661477
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC CTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGEST: gi|213611011|gb|DB970938.1|DB970938
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTG
EST: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAC CCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGT
genomic: CCCTGCCATTCCAGCTGCCATCATTGCCGAGTGCTATGGCTTTGGAAGAGtgagtccctc ... ggcaaacagcC-TTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGT
gacgattctctatttttatttattcacttatttatttattattatggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAG
gattgac putative branch site (score: 3)
ttctctatttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatttctctattgctcatttcccgctattacgttgcgacgattgacgattctctatttttatttattcacttatttatttattattatggcaaacagcCTTGGATTTTTATATTGAGCTTACTTGGACTTACACCACTTGCTGAACGTGTGAGCTTCATCACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - -ctattgc
- - - - - - - - - - - cccgcta
- - - - - - - - - - - - - - - - - -tgcgacg