Sequence
atgc intronic sequence ATGC exonic sequence...gttttacctacactaaatcatgattgtaggtatatgttatttttcttgtagtgacatgtaataggattcattaaacaagttactcttgtgcatgtgcaggAGCTTCCAATTCATCAAAGAGCAGATGCTGTGAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGAGACCCAGTGTATGGATCTGTTGGAGCCATATC
Basic information
species | Glycine max |
transcript | GLYMA18G06530.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G06530.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0004g07200.t01 (Vitis vinifera), 3'ss of exon 1
------gttttacctacactaaatc--------atgattgtaggtatatgttatttttcttgtagtgaca-tgtaa--taggattcattaaacaagttactc-ttgt-----gcatgtgcaggAGCTTCCAATTCATCAAAGAGCAGATGCTGTGAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGAGACCCAGTGTATGGATCTGTTGGAGCCATATC
| || || | |||| | | | | || || || || | || ||||| ||| || || || || |||| ||| | ||||||||||| |||| || || |||||| |||||||||||||||||||| ||||||||||||||| ||||||| || ||||||| |||||| || || |
gtatccatcttctcttcgtccaatccatcttcagttcctccactggtttgatagcttaaatggaacctcagtgtaaactagattttcttttttctttttcttgttgtttgttacatatacagGAGCTTCCCGTTCACCAGAGGATAGATGCAGTGAGCAGTTTAGTTTATGAAGCAAATGCAAGAGTGCGAGACCCGGTTTATGGATGTGTTGGGGCGATTT- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtagtgacatgtaataggattcattaaacaagttactcttgtgcatgtgcaggAGCTTCCAATTCATCAAAGAGCAGATGCTGTGAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGAGACCCAGTGTATGGATCTGTTGGAGCCATATC
attcattaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttttacctacactaaatcatgattgtaggtatatgttatttttcttgtagtgacatgtaataggattcattaaacaagttactcttgtgcatgtgcaggAGCTTCCAATTCATCAAAGAGCAGATGCTGTGAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGAGACCCAGTGTATGGATCTGTTGGAGCCATATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - cctacac
- - - - - - - - - catgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - catgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttgtg