1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttaccttttttatatggagaagcttatccaaacaggaattaagtcatagttgtgtgtcttgtatatgttgttcattttctttttttatttttatgttcagGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAGTGAAGGAAGGTAAGAAGTCCAAGTTCAGTTTAGGTGTGTCCGATCCTAA
species | Glycine max |
transcript | GLYMA17G13770.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAG GCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAGEST: gi|213606714|gb|DB972570.1|DB972570
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAGgtaactaaac ... ttatgttcagGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAG
EST: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAG GCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAGEST: gi|192330713|gb|FK022326.1|FK022326
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAGgtaactaaac ... ttatgttcagGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAG
EST: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAG GCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAGEST: gi|193650359|gb|FK598100.1|FK598100
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAGgtaactaaac ... ttatgttcagGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAG
EST: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCCGAAG GCATATTAACTGATGAGCTGAGGACTGTCTTGGAGACCAACTTGCCTAAAGEST: gi|213595812|gb|DB966227.1|DB966227
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAGgtaactaaac ... ttatgttcagGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAG
EST: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAG GCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAGEST: gi|14205835|gb|BG839513.1|BG839513
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAGgtaactaaac ... ttatgttcagGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAG
EST: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTNTGAAG GCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAGEST: gi|213606556|gb|DB972505.1|DB972505
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAGgtaactaaac ... ttatgttcagGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAG
EST: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAG GCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAGEST: gi|209723471|gb|BW669472.1|BW669472
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAGgtaactaaac ... ttatgttcagGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAG
EST: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAG GCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAGEST: gi|213599418|gb|DB970366.1|DB970366
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAGgtaactaaac ... ttatgttcagGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAG
EST: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAG GCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAGEST: gi|193619631|gb|FK572619.1|FK572619
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAGgtaactaaac ... ttatgttcagGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAG
EST: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAG GCATATTAACTGATGAGCTGAGGACTEST: gi|213599197|gb|DB962262.1|DB962262
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAGgtaactaaac ... ttatgttcagGCATATTAACTGATGAGCTGAGGACT
EST: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAG GCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAGEST: gi|213593750|gb|DB957870.1|DB957870
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAGgtaactaaac ... ttatgttcagGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAG
EST: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAG GCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAG
genomic: TTTCACTTCCGCTCTCGATGCTCTCAAACAGTGCAACGCCGTCTCTGAAGgtaactaaac ... ttatgttcagGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAG
atagttgtgtgtcttgtatatgttgttcattttctttttttatttttatgttcagGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAGTGAAGGAAGGTAAGAAGTCCAAGTTCAGTTTAGGTGTGTCCGATCCTAA
ttcattttcttttttt CT-rich tract
ttgtatatgttgttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaccttttttatatggagaagcttatccaaacaggaattaagtcatagttgtgtgtcttgtatatgttgttcattttctttttttatttttatgttcagGCATATTAACTGATGAGCTGAGGACTGTTTTGGAGACTAACTTGCCTAAAGTGAAGGAAGGTAAGAAGTCCAAGTTCAGTTTAGGTGTGTCCGATCCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt