Sequence
atgc intronic sequence ATGC exonic sequencegttcgatttttttcaattcgatttcgattttaatttttctttcttttacatgcattccgttctccgttcttattagtctcatcgtaatcttgtgcgtgttacagACCAACAGGTCCGCGAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAGCAATGGTTATCTCAAG
Basic information
species | Glycine max |
transcript | GLYMA17G10190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G10190.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv17s0000g07550.t01 (Vitis vinifera), 3'ss of exon 1
---------------------------------------------------------gttc--gatttttttcaattcgatttcgattttaatttttctttcttttacatgcattccgttctccgttcttattagtctcatcgtaatcttgtgcgtgttacagACCAACAGGTCCGCGAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAGCAATGGTTATCTCAAG
|||| | || | |||| ||| ||| | |||| | | | | || | || ||| || || || | | | || || | || ||||| |||||| | || ||||||||||||| ||| ||||||| ||||||||||||||| | || |||
gttagaattcaatctcagtttctttttctcttttctaaatttgttttgttttgttttgttcctggttctcttcagttcagttt-gtttttgttcctcgcaatctgtctgtgttgtttgtcctcttttgtttgacgtgatttgtttgttttctgtggttttcagACGAACAGGACAGCAAAATTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAGCAATGGCTTTCCAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213620129|gb|DB967472.1|DB967472EST: TGCCGATTCCCTCCGCCGCAAACACCAGGAACCCGGGGAAGAAGAAGAGG ACCAACAGGTCCGCGAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAG
genomic: TGCCGATTCCCTCCGCCGCAAACACCAGGAACCCGGGGAAGAAGAAGAGGgttcgatttt ... cgtgttacagACCAACAGGTCCGCGAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAG
EST:
gi|209703781|gb|BW656886.1|BW656886EST: TGCCGATTCCCTCCGCCGCAAACACCAGGAACCCGGGGAAGAAGAAGAGG ACCAACAGGTCCGCGAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAG
genomic: TGCCGATTCCCTCCGCCGCAAACACCAGGAACCCGGGGAAGAAGAAGAGGgttcgatttt ... cgtgttacagACCAACAGGTCCGCGAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgcattccgttctccgttcttattagtctcatcgtaatcttgtgcgtgttacagACCAACAGGTCCGCGAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAGCAATGGTTATCTCAAG
ttcttatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcgatttttttcaattcgatttcgattttaatttttctttcttttacatgcattccgttctccgttcttattagtctcatcgtaatcttgtgcgtgttacagACCAACAGGTCCGCGAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAGCAATGGTTATCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC