1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gaaacttcagttctgcttcttctgcagtttcaaggttgtttgtttattttctcacgaggtgaaattgattgatgtgtttgttcctctttttatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAATGAAATGGCGGAAGTAGAAGATGACATGTATTTCCGTGGTAGAGTGTTT
species | Glycine max |
transcript | GLYMA17G00740.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTTAAGCCAAGCCAAG CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAAEST: gi|209697566|gb|BW660573.1|BW660573
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
EST: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAG CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAAEST: gi|213607081|gb|DB966986.1|DB966986
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
EST: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAG CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAAEST: gi|192317031|gb|FK007826.1|FK007826
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
EST: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAG CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAAEST: gi|208240344|gb|GE041376.1|GE041376
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
EST: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAG CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAAEST: gi|213587960|gb|DB957433.1|DB957433
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
EST: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAG CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAAEST: gi|209722848|gb|BW682907.1|BW682907
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
EST: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAG CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAAEST: gi|192319504|gb|FK009486.1|FK009486
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
EST: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAG CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAAEST: gi|192317030|gb|FK007825.1|FK007825
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
EST: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAG CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAAEST: gi|209704179|gb|BW664797.1|BW664797
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
EST: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAG CAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
genomic: CGCCCCAGATCAGATCCTCTCTCTTCAATTCAACTTCAAGCCAAGCCAAGgtccttcctt ... tatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAA
attttctcacgaggtgaaattgattgatgtgtttgttcctctttttatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAATGAAATGGCGGAAGTAGAAGATGACATGTATTTCCGTGGTAGAGTGTTT
tgtttgttcctctttt CT-rich tract
aaattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaacttcagttctgcttcttctgcagtttcaaggttgtttgtttattttctcacgaggtgaaattgattgatgtgtttgttcctctttttatggagcagCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAATGAAATGGCGGAAGTAGAAGATGACATGTATTTCCGTGGTAGAGTGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG