1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaatgtctataatgctagtgcaagaagctctggcaaacagtgtctcctccccccatttggctcttataaaatacacttgttctgttgttttgttaactagTTGAGGTGAAGAGTGGAGCAGATGGTTTCATAATCAAAATGAGGGATGGAAGACACTTAAGATGCGTCCATAACAATCCTCAGGGAGGACATCTTCCAGA
species | Glycine max |
transcript | GLYMA1784S00200.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: NTCAATGAAAAAGATGAAGAATTATGTTAATTCTAGCGTCATTGAAGCTG TTGAGGTGAAGAGTGGAGCAGATGGTTTCATAATCAAAATGAGGGATGGAA
genomic: TTCAATGAAAAAGATGAAGA-TTATGTTAATTCTAGCGTCATTGAAGCTGgtatggcaat ... tgttaactagTTGAGGTGAAGAGTGGAGCAGATGGTTTCATAATCAAAATGAGGGATGGAA
cctccccccatttggctcttataaaatacacttgttctgttgttttgttaactagTTGAGGTGAAGAGTGGAGCAGATGGTTTCATAATCAAAATGAGGGATGGAAGACACTTAAGATGCGTCCATAACAATCCTCAGGGAGGACATCTTCCAGA
ttgtttt CT-rich tract
ttataaaatacactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatgtctataatgctagtgcaagaagctctggcaaacagtgtctcctccccccatttggctcttataaaatacacttgttctgttgttttgttaactagTTGAGGTGAAGAGTGGAGCAGATGGTTTCATAATCAAAATGAGGGATGGAAGACACTTAAGATGCGTCCATAACAATCCTCAGGGAGGACATCTTCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - aatgcta
- - - - - - - - - tgcaaga
- - - - - - - - - - - - - - - - gcaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgttg