1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcgttggatttttgttcctaccttgtttgcaaaatgctaagtcgtatttttcttttttgctatttgatgtttaagtctgatatgattgcgttatatgcagTGGGTATCAAAGTTGGCATAGCAGAAGTGCAATCAGCTCTAGTTTC
species | Glycine max |
transcript | GLYMA16G28350.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGTTTCTCTGTTGTTTCTGCACTGTTTTGAGGAGGTTGAAGGGGAAAAG TGGGTATCAAAGTTGGCATAGCAGAAGTGCAATCAGCTCTAGTTTCEST: gi|213602893|gb|DB972467.1|DB972467
genomic: TCGTTTCTCTGTTGTTTCTGCACTGTTTTGAGGAGGTTGAAGGGGAAAAGgtttaaacaa ... ttatatgcagTGGGTATCAAAGTTGGCATAGCAGAAGTGCAATCAGCTCTAGTTTC
EST: TCGTTTCTCTGTTGTTTCTGCACTGTTTTGAGGAGGTTGAAGGGGAAAAG TGGGTATCAAAGTTTGCATAGCAGAAGTGCAATCAGCTCTAGTTTCEST: gi|298192637|gb|HO033071.1|HO033071
genomic: TCGTTTCTCTGTTGTTTCTGCACTGTTTTGAGGAGGTTGAAGGGGAAAAGgtttaaacaa ... ttatatgcagTGGGTATCAAAGTTGGCATAGCAGAAGTGCAATCAGCTCTAGTTTC
EST: TCGTTTCTCTGTTGTTTCTGCACTGTTTTGAGGAGGTTGAAGGGGAAAAG TGGGTATCAAAGTTGGCATAGCAGAAGTGCAATCAGCTCTAGTTTCEST: gi|207685673|gb|GD669607.1|GD669607
genomic: TCGTTTCTCTGTTGTTTCTGCACTGTTTTGAGGAGGTTGAAGGGGAAAAGgtttaaacaa ... ttatatgcagTGGGTATCAAAGTTGGCATAGCAGAAGTGCAATCAGCTCTAGTTTC
EST: TCGTTTCTCTGTTGTTTCTGCACTGTTTTGAGGAGGTTGAAGGGGAAAAG TGGGTATCAAAGTTGGCATEST: gi|208050404|gb|GD845865.1|GD845865
genomic: TCGTTTCTCTGTTGTTTCTGCACTGTTTTGAGGAGGTTGAAGGGGAAAAGgtttaaacaa ... ttatatgcagTGGGTATCAAAGTTGGCAT
EST: TCGTTTCTCTGTTGTTTCTGCACTGTTTTGAGGAGGTTGAAGGGGAAAAG TGGGTATCAAAGTTGGCATAGCAGAAGTGCAATCAGCTCTAGTTTC
genomic: TCGTTTCTCTGTTGTTTCTGCACTGTTTTGAGGAGGTTGAAGGGGAAAAGgtttaaacaa ... ttatatgcagTGGGTATCAAAGTTGGCATAGCAGAAGTGCAATCAGCTCTAGTTTC
atttttcttttttgctatttgatgtttaagtctgatatgattgcgttatatgcagTGGGTATCAAAGTTGGCATAGCAGAAGTGCAATCAGCTCTAGTTTC
gtctgat putative branch site (score: 4)
tatttgatgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgttggatttttgttcctaccttgtttgcaaaatgctaagtcgtatttttcttttttgctatttgatgtttaagtctgatatgattgcgttatatgcagTGGGTATCAAAGTTGGCATAGCAGAAGTGCAATCAGCTCTAGTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC