1 5' 3' | 2 5' 3' | 3 5' 3' |
...tatagtatgttaattggggtttgtagttgatttgtcttttttatatgatcttatgtcgaccctgttgttttatttgttcttttattgctgtaatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCCCGAAAG
species | Glycine max |
transcript | GLYMA16G17370.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298171485|gb|HO016517.1|HO016517
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGCTATCCCCAATGGGCACTTCCGGAAEST: gi|298190321|gb|HO032442.1|HO032442
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCGATGGGCACTTCCGGAAEST: gi|298187819|gb|HO031776.1|HO031776
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298188828|gb|HO035521.1|HO035521
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|207758545|gb|GD726799.1|GD726799
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298176033|gb|HO015438.1|HO015438
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298174537|gb|HO017760.1|HO017760
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|209713134|gb|BW653843.1|BW653843
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298199481|gb|HO042844.1|HO042844
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298184300|gb|HO029513.1|HO029513
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|18038779|gb|BM307073.1|BM307073
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298191196|gb|HO038675.1|HO038675
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|26269595|gb|CA820658.1|CA820658
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: GCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298186766|gb|HO037399.1|HO037399
genomic: GCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298189983|gb|HO032104.1|HO032104
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298184392|gb|HO029605.1|HO029605
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|7693301|gb|AW761395.1|AW761395
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: CGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|9564869|gb|BE474378.1|BE474378
genomic: CGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298189992|gb|HO032113.1|HO032113
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|17963591|gb|BM270338.1|BM270338
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|14258939|gb|BG881847.1|BG881847
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: GCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298170572|gb|HO019196.1|HO019196
genomic: GCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: ACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298169024|gb|HO020384.1|HO020384
genomic: ACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCCTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298175316|gb|HO015975.1|HO015975
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298185009|gb|HO030222.1|HO030222
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTCCCGGAAEST: gi|208257218|gb|GE056689.1|GE056689
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|23726992|gb|BU761509.1|BU761509
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: GCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298198943|gb|HO042306.1|HO042306
genomic: GCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298183645|gb|HO028858.1|HO028858
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCGTAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|193484000|gb|FK452403.1|FK452403
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|20498416|gb|BQ273346.1|BQ273346
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: CCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|208122672|gb|GD923616.1|GD923616
genomic: CCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|17021966|gb|BM093000.1|BM093000
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: AGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298168564|gb|HO009494.1|HO009494
genomic: AGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAACGGGCACTTCCGGAAEST: gi|14999831|gb|BI320645.1|BI320645
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: GCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|209718652|gb|BW662730.1|BW662730
genomic: GCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAEST: gi|298170562|gb|HO019186.1|HO019186
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
EST: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAG GTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
genomic: TCCGCAGCAGCCACACTTCTTCGCCGTTTCAGCTGAAGAGCCATCCGCAGgtggttttca ... taatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAA
tgatcttatgtcgaccctgttgttttatttgttcttttattgctgtaatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCCCGAAAG
ttgttttatttgttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatagtatgttaattggggtttgtagttgatttgtcttttttatatgatcttatgtcgaccctgttgttttatttgttcttttattgctgtaatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCCCGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA